Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3831 ATGGAAGAAATGGTGATGGCAACATTGGACCTAATAACTGCATCTCCTCATTCATCTTCATCTTCTTCATCTTCACCCACCACTGATAATAATAACAACCACCCTTCTTCTTCTTCTTCTTCTTCTTCATCACTTTGTCTCTCAAGCATCTCAACAAGAAGAACCGATTTGAGCACCGACCTCAGACTTGGCCTTAGTCTCTCTCCTTCTCATTATTCAACACCATCAAGGGAGCAAAGAAGTAGTTTTGATTGGCCACCAGTGAAGTCAACATTGAGGTGCACCCTTGTTGAAAAAAGTCAAATATCTCTGTTTGTTAAAGTATACATGGAAGGCATCCCCATCGGTAGGAAGCTCAATCTGCTGGCACACCATAATTATCATGCTCTTGTTAAGGCTCTTGCCAACATGTTCAGAACTACCATACTCTGCCCTGACTCTCATCAATTACCACTCATCTCTGGGAATAATGTTCATGTTCTTACTTATGAGGATCAAGAAGGGGATTGGATGATGGTTGGAGATGTTCCATGGGAGATGTTCTTGACAAGTGTGAAGAAGTTGAAGATCACAAGAGCTGACAGATGTTAA 591 0.4162 MEEMVMATLDLITASPHSSSSSSSSPTTDNNNNHPSSSSSSSSSLCLSSISTRRTDLSTDLRLGLSLSPSHYSTPSREQRSSFDWPPVKSTLRCTLVEKSQISLFVKVYMEGIPIGRKLNLLAHHNYHALVKALANMFRTTILCPDSHQLPLISGNNVHVLTYEDQEGDWMMVGDVPWEMFLTSVKKLKITRADRC* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3831 196 Gene3D - 98 196 - -
Amo01g3831 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 196 IPR003311 GO:0005634|GO:0006355
Amo01g3831 196 ProSiteProfiles PB1 domain profile. 103 195 IPR000270 GO:0005515
Amo01g3831 196 SUPERFAMILY CAD & PB1 domains 102 190 - -
Amo01g3831 196 MobiDBLite consensus disorder prediction 12 45 - -
Amo01g3831 196 Pfam AUX/IAA family 85 192 IPR033389 -
Amo01g3831 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 33 196 - -
Amo01g3831 196 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3831 Amo-Chr1 111631834 111633764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3831 87 190 B3 DNA Binding Superfamily AT1G59750 35.238 1.92e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo01g3831 AUX_IAA 2.4e-31 CL0072