Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3821 ATGGCTTGTTTGAAACCTGATGAGTTGGAGCTTGTTGGGAGAGGAGAGCAAGGTTCTCATCATGCTATGGAAAGAATTGGTGATGCTAATGTTGGTTCCAACAACAACAACATGGCTGATGATGCTTCTATGATGCATTTTCCTGCTAACTGGCCAATGCCAGCATCTGGACTGAATGCATCAGCGCCAACTCATTTTACCATCTTATTCAATGGGAACACTTATGTCTATGATGGAATTAATACAGAGAAGGTGCAAGAGATAATGCTTATTGCTGCTGCATATGCCAAGTCTGCTGAAGTGAAAATTGGGACACAATCTTCATTCACTCCACTCATTCCCACTTCCACAAGTTCTTCTCCTGCACAAAGAAACTCCAACAACTTGCCTTCAAAACAATCTGTCTGCTTTCCTGCAGAAAAGAGTTCCATTTGCAGGCTGCAAGAATTTCCGTTAGCACGTAGACAATCTCTTCAGAGGTTTCTTGAGAAGCGACGAGTCAGGTTGTTTAGCAAAGCCCCTTATGGTTTCTCAAAAAACATGGCTGGCCTCTATGATGACAATAGTCCAGGGAACATAGAGAACAGCTTTTATGATGACAATAGTCCACAAGATTTTGCTTCTTAA 627 0.4211 MACLKPDELELVGRGEQGSHHAMERIGDANVGSNNNNMADDASMMHFPANWPMPASGLNASAPTHFTILFNGNTYVYDGINTEKVQEIMLIAAAYAKSAEVKIGTQSSFTPLIPTSTSSSPAQRNSNNLPSKQSVCFPAEKSSICRLQEFPLARRQSLQRFLEKRRVRLFSKAPYGFSKNMAGLYDDNSPGNIENSFYDDNSPQDFAS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3821 208 PANTHER DIVERGENT CCT MOTIF PROTEIN 18 183 - -
Amo01g3821 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 183 IPR040390 -
Amo01g3821 208 Pfam tify domain 61 93 IPR010399 -
Amo01g3821 208 MobiDBLite consensus disorder prediction 112 131 - -
Amo01g3821 208 SMART tify_2 59 94 IPR010399 -
Amo01g3821 208 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Amo01g3821 208 Pfam Jas motif 151 175 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3821 Amo-Chr1 111534131 111537666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3821 63 175 Tify Gene Family AT5G20900 43.860 1.23e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo01g3821 tify 7.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3821 K13464 - gmx:100306655 141.354