Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3796 ATGGAAACTGGAGGAGGCTTTCACGGTTATCGCAACCTTCCTACTACTACCTCTGGGTTGAAGTTATCTGTGTCAGAGATGAACATGAGAGCAGTAGAAAACAACACAGGAAGCAGTAATAATAATCATACAGATGATAATGAATGCACTGTGAGGGAGCAAGATCGGTTCATGCCAATAGCAAATGTGATTAGGATAATGCGCAAGATCCTACCACCGCACGCTAAAATCTCTGATGACGCAAAAGAAACAATACAAGAATGCGTATCAGAGTACATCAGCTTCATCACCGGAGAAGCCAACGAGCGGTGTCAGAGGGAGCAACGGAAGACCATCACGGCGGAGGACGTTCTTTGGGCAATGAGTAAGCTTGGCTTTGACGATTACATTGAGCCTCTGACGATGTACCTTCACAGGTACCGTGAGCTTGAAGGTGACCGTACCTCCATGAGAGGAGAGCCACTTGGAAAGAGGACTGTTGACTATGGAACTCTTGGTGTTGCTGCTGCTTCTACTTTTGTTCCACCGTTTCACATTGGACATCACCATCATCATCCTCATCCCAGTAGCTATTATGGTACACCCATGGGGAATTACATTAGAGATGCACCCAATGCTGGCTCGTCTCTTCAGCCTCCTTCACTTGCTCATGCTGAACCAAATACTCAATACAAATGA 678 0.4617 METGGGFHGYRNLPTTTSGLKLSVSEMNMRAVENNTGSSNNNHTDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVDYGTLGVAAASTFVPPFHIGHHHHHPHPSSYYGTPMGNYIRDAPNAGSSLQPPSLAHAEPNTQYK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3796 225 MobiDBLite consensus disorder prediction 202 225 - -
Amo01g3796 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo01g3796 225 Gene3D Histone, subunit A 44 159 IPR009072 GO:0046982
Amo01g3796 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 173 - -
Amo01g3796 225 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Amo01g3796 225 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Amo01g3796 225 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Amo01g3796 225 ProSitePatterns NF-YB/HAP3 subunit signature. 88 104 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo01g3796 225 MobiDBLite consensus disorder prediction 204 225 - -
Amo01g3796 225 SUPERFAMILY Histone-fold 54 153 IPR009072 GO:0046982
Amo01g3796 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 121 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3796 Amo-Chr1 111177102 111179460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3796 5 184 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.564 1.48e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo01g3796 CBFD_NFYB_HMF 6.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3796 K08065 - gmx:100194424 309.686