Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3794 ATGGGTGAAGGGTTGAGGCTACTGAAAATCACAGTTGTGCGAGGGAAAACATTAGTGATCCGGGATTTCAAGAGCAGTGATCCTTATGTTGTGGTCAAGCTTGGCAATCAGACAGCAAAGACCAGGGTCATCAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTAAATTTCACTCTCACTGAACCATTGGGATTGCTCAATTTGGAGGTATTTGATAAAGATGTTTGGAAGGCTGATGACAAGATGGGAAAATCATACCTGAACCTTCAGCCATTGGTGTCTGCAGCTAGATTGAGGGACATTTTGGGGAGTTCATGTGGTGAAACAGCACTGAGGAAGGTGATGCCAGAGAGAGATAACTGTCTTGTCCGTGAAAGCATCATCAAAAATAATGTGAATGGAGAGGTGGTGCAGAATGTTTGGTTAAGGCTTGATGGAGTTGAGTCTGGGGAGCTTGAATTGACCATCAAGTTGATCACTCGTGTTGCCTCTTAG 498 0.4418 MGEGLRLLKITVVRGKTLVIRDFKSSDPYVVVKLGNQTAKTRVINSCLNPVWNEELNFTLTEPLGLLNLEVFDKDVWKADDKMGKSYLNLQPLVSAARLRDILGSSCGETALRKVMPERDNCLVRESIIKNNVNGEVVQNVWLRLDGVESGELELTIKLITRVAS* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3794 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Amo01g3794 165 Gene3D C2 domain 5 164 IPR035892 -
Amo01g3794 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 11 1 162 - -
Amo01g3794 165 CDD C2_ArfGAP 7 151 - -
Amo01g3794 165 PRINTS C2 domain signature 46 59 IPR000008 -
Amo01g3794 165 PRINTS C2 domain signature 67 75 IPR000008 -
Amo01g3794 165 PRINTS C2 domain signature 22 34 IPR000008 -
Amo01g3794 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 162 IPR044562 -
Amo01g3794 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 159 IPR035892 -
Amo01g3794 165 Pfam C2 domain 8 98 IPR000008 -
Amo01g3794 165 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3794 Amo-Chr1 111151166 111152104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3794 1 158 C2H2 Transcription Factor Family AT4G21160 43.750 2.94e-37 129