Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3790 ATGAGTAGTGATAAGAATAAAAAAGCAGCAGATTCACCTGAAAGCGGTGATTCCAGCAACCAGTGGTTCTTTGAGCTCTCTGACTACTTGAAGCTGAATGATGATGATGATGATCAATGGCCAGARGATGATAATGTTCCACCACCACTACCAGAAGCAGAGCCATTATTTTTTCCCAATACTAATGAAGTTGGAGATTTTGGAGCAAGTGGCAGCGGCAGTAACCACCTTCAAGGGTCTTCTAATGCTCGAGAGGTTAGTGGAAGTGAGAAGAAAGATGCTAGTAGGGAGAGAGTTGCATTCAAAACCAAGTCCGAGGTTGAAATACTAGACGATGGTTACAGGTGGAGGAAGTATGGAAAGAAAATGGTTAAGAACAGCCCAAACCCAAGAAACTACTATAGGTGTACAGTGGATGGATGTCCGGTAAAGAAGAGAGTTGAAAGAGACAGGGAAGATCCCACATATGTAATTACAACCTACGAAGGAAATCATACTCACCCAACATCGTAG 513 0.4269 MSSDKNKKAADSPESGDSSNQWFFELSDYLKLNDDDDDQWPEDDNVPPPLPEAEPLFFPNTNEVGDFGASGSGSNHLQGSSNAREVSGSEKKDASRERVAFKTKSEVEILDDGYRWRKYGKKMVKNSPNPRNYYRCTVDGCPVKKRVERDREDPTYVITTYEGNHTHPTS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3790 170 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3790 170 MobiDBLite consensus disorder prediction 33 100 - -
Amo01g3790 170 MobiDBLite consensus disorder prediction 65 85 - -
Amo01g3790 170 SUPERFAMILY WRKY DNA-binding domain 103 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3790 170 MobiDBLite consensus disorder prediction 1 21 - -
Amo01g3790 170 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3790 170 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3790 170 MobiDBLite consensus disorder prediction 86 100 - -
Amo01g3790 170 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 10 169 - -
Amo01g3790 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 169 IPR044810 GO:0003700
Amo01g3790 170 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3790 Amo-Chr1 111125512 111127611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3790 35 169 WRKY Transcription Factor Family AT5G26170 49.315 1.49e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g3790 WRKY 4.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3790 - - adu:107461015 322.398