Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3777 ATGGGGATTGATGAGGCACAAGAGTCATTGCTTGCAAGAGATCATTATCATGAGAAAAGTGACCTCCAGAGAAGAAGGTCCACCAGGAATTATGGCACAGCTTCATCAGATTCATCGTCACAGACATTCAACAATCTCCAACAAAATAACAGTAATCATGTAGTTATAGTCCAAAATAATAATAATAATAATAATAATAACCCTTCAACAGAACAAGCAGAATTTCAATTGAAACCAGTGTTGTTGTGGCTAACAATGTACCTAGGTGGAGGTACCCTATGCTTCTATATGACAAGTAACCAAATTGAAGGTACAAAAACCAATCCCTTTCTTGATGCACTTTACTTGTGTGTTGTGACAATGACCACTGTGGGTTATGGAGATCTTGTCCCTAAAAGCACAGTGGCAAAACTACTTGCATGCTTCTACGTCTTCACCGGAATGGCCCTCGTTGGTTTGATTCTTAACAAAGCAGCAGATTACATTGTTGAGAAGCAAGAAATGTTGTTTGTTAAGGCCATGCACAAAGAGCTTGACAAAGAGTTTCAATCTAACAACAATAGCAACAAGGCCAAACACAAGTTCTTGGTTGCAATTTGCACCTTCTTGGTGCTTATTACAGTGGGAATGATTTTCCTATCTTGGGTTGAGGATCTTGATTTTGTGGATGCATTGTATTGTGTTTGTTCCACAGTGACAACTTTGGGTTATGGGGATAAGAGTTTTTCAACTGGAATTGGTCGTGCTTTTGCAGTGTTTTGGATATTGAGTAGCACCATTTGCTTAGCTCAATGTTTTGCATATCTTGCTGAAATGCACACTGATGAAAGACAAAGATCACTTGCCAAAATGATTCTTTCTAGGAAAATCTCACGTCCTGATCTTGAAGCTGCTGATCTTGATGGAGACAAATCTGTTAGTGCTGCAGAGTTTGTTGTATACAAGTTGAAGGAAATGGGAAAGATCAACGATGAAGATGTTTCCGATGTATTGGAATGGTTTAGAAAACTAGATGTAGATAAATCAGGAACTCTGACAGAAGCTGATATCATTTGA 1056 0.3854 MGIDEAQESLLARDHYHEKSDLQRRRSTRNYGTASSDSSSQTFNNLQQNNSNHVVIVQNNNNNNNNNPSTEQAEFQLKPVLLWLTMYLGGGTLCFYMTSNQIEGTKTNPFLDALYLCVVTMTTVGYGDLVPKSTVAKLLACFYVFTGMALVGLILNKAADYIVEKQEMLFVKAMHKELDKEFQSNNNSNKAKHKFLVAICTFLVLITVGMIFLSWVEDLDFVDALYCVCSTVTTLGYGDKSFSTGIGRAFAVFWILSSTICLAQCFAYLAEMHTDERQRSLAKMILSRKISRPDLEAADLDGDKSVSAAEFVVYKLKEMGKINDEDVSDVLEWFRKLDVDKSGTLTEADII* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3777 351 Pfam Ion channel 83 163 IPR013099 -
Amo01g3777 351 Pfam Ion channel 202 272 IPR013099 -
Amo01g3777 351 ProSiteProfiles EF-hand calcium-binding domain profile. 325 351 IPR002048 GO:0005509
Amo01g3777 351 SUPERFAMILY Voltage-gated potassium channels 187 288 - -
Amo01g3777 351 PRINTS Two pore domain K+ channel signature 119 147 IPR003280 GO:0005267|GO:0016020|GO:0071805
Amo01g3777 351 PRINTS Two pore domain K+ channel signature 233 242 IPR003280 GO:0005267|GO:0016020|GO:0071805
Amo01g3777 351 SUPERFAMILY Voltage-gated potassium channels 79 169 - -
Amo01g3777 351 SUPERFAMILY EF-hand 295 350 IPR011992 -
Amo01g3777 351 ProSitePatterns EF-hand calcium-binding domain. 338 350 IPR018247 -
Amo01g3777 351 Gene3D - 75 172 - -
Amo01g3777 351 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 38 349 IPR003280 GO:0005267|GO:0016020|GO:0071805
Amo01g3777 351 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 38 349 - -
Amo01g3777 351 MobiDBLite consensus disorder prediction 8 26 - -
Amo01g3777 351 MobiDBLite consensus disorder prediction 1 44 - -
Amo01g3777 351 Gene3D - 294 351 - -
Amo01g3777 351 Gene3D - 173 293 - -
Amo01g3777 351 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3777 Amo-Chr1 110982128 110983263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3777 77 351 Ion Channels AT5G55630 55.714 1.38e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3777 K05389 - gmx:100799492 419.853