Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3768 ATGTATCAAATGCTACAAAGCAATCTATGCCACAGTATCCACCATGATAATATGATGAAGGGAGCCACTGTTTCGTTTGAATCCTGCAAGGATCAATACTTTACCCTGGAATCATCCCCAGCAACCACTGAGCTCATAGGTTGTGAAACTGATTCCCCTTCCTATGCCAGTGGATTATCTTCAAATAGGAGTCCATTTTCCCCACAAGTCTCTCAGTCATGCTATTCAGATAACCACCACTCATCCGACAACACCTATGGCTCGCCTTACTCTAGCGTTGATGATGGGAATGAATGGAAGCACAAGCTCAGAGAACTCGAGATTTCGTTGTTGGAGCCTAATGAATCAGATGCTGCTGACAGTTATGACAACAACTGTGTCCAAGGTGGCCTCACCACAGCCTCTCCAACAATTGAATATGATTGGGATCAGATTGTGCAGATGATTCCAAAGTTAGAGCTGAGAGATGTGCTGGTTCGATGCGCGCAGGCCGTGTCTGATGATGATATAGCCACAGCAATTGGTTGGATGGATAATGTGTTGGGGAAGATGGTATCAGTTTATGGGGAACCATTGCAGAGGCTAGGTGCTTACTTGTTGGAGGGGCTAAGAGCAAGATTGGAGTCATCTGGGAGCATGATATACAAATCCTTAAAGTGTGAACAACCAACAAGCAAAGAACTGATGAGTTACATGCACATATTGTATCAGATTTGCCCATTTTGGAAGTTTGCTTATGTAGCTGCAAACGCAGTCATCTTAGAAGCAATGGCAACTGAGTCCATGATTCATATAATCGATTTCCAAATCACACAGGGCACACAGTGGCTTTTACTTATTCAAGCTCTTGCACATAGGCCAGGTGGACCGCCGTCCATTCGCATAACCGCCGTGGATGATTCCCAATCCATTCATGCTCGCGGCGGAGGACTTGAGATTGTTGGACAACGGCTCTCGGATTTCGCCAGGTCTTGTGGAGTGCCATTGGAGTTCCACATTGCTGCAATGTGTGGCAGCCAAGTTGAAAGAACAAATATAGTGATTCGAGCCGGGGAAGCTCTGGCTGTAAATTTTCCTTATGTTCTGCATCACATGCAGGATGAGAGTGTAAGCACGGAGAATCACAGGGACAGATTGTTGAGATTGGTTAAGAGCTTGTCTCCCAAGGTTGTGACACTTGTTGAGCAAGAATCCAACACCAACACTTCATCTTTCTTCAACAGGTTTGTGGAGATAATGGATTACTACACTGCCATGTTTGAATCAATAGATGCCGGGTGCCCGAGAGATGACAGGAAAAGGCTGAATGCGGAGCAGCACTGCGTGGCGCGGGACATAGTAAACATGGTGGCTTGCGAGGGGGTGGAGAGGGTAGAGAGGCATGAACTTCTAGGAAAGTGGAGAATGAGATTCTCCATGGCTGGTTTCAGACAATGGCCGTTGAGTCCTTCTGTGGTGGCTGCTGTCCGGAACATGTTGAAAGAATTCAATGGAAATTATAGGGTTGAGCAGAGAGATGGTGCTCTCTATCTTGGATGGATGAGGAGAGCTATGGTTACTTCTTCAGCTTGGTGCTGA 1578 0.4632 MYQMLQSNLCHSIHHDNMMKGATVSFESCKDQYFTLESSPATTELIGCETDSPSYASGLSSNRSPFSPQVSQSCYSDNHHSSDNTYGSPYSSVDDGNEWKHKLRELEISLLEPNESDAADSYDNNCVQGGLTTASPTIEYDWDQIVQMIPKLELRDVLVRCAQAVSDDDIATAIGWMDNVLGKMVSVYGEPLQRLGAYLLEGLRARLESSGSMIYKSLKCEQPTSKELMSYMHILYQICPFWKFAYVAANAVILEAMATESMIHIIDFQITQGTQWLLLIQALAHRPGGPPSIRITAVDDSQSIHARGGGLEIVGQRLSDFARSCGVPLEFHIAAMCGSQVERTNIVIRAGEALAVNFPYVLHHMQDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSSFFNRFVEIMDYYTAMFESIDAGCPRDDRKRLNAEQHCVARDIVNMVACEGVERVERHELLGKWRMRFSMAGFRQWPLSPSVVAAVRNMLKEFNGNYRVEQRDGALYLGWMRRAMVTSSAWC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3768 525 Pfam GRAS domain family 154 524 IPR005202 -
Amo01g3768 525 ProSiteProfiles GRAS family profile. 145 525 IPR005202 -
Amo01g3768 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 524 IPR005202 -
Amo01g3768 525 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 2 524 - -
Amo01g3768 525 MobiDBLite consensus disorder prediction 56 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3768 Amo-Chr1 110900469 110903822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3768 30 524 GRAS Transcription Factor Family AT4G17230 59.920 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo01g3768 GRAS 1.4e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3768 - - aip:107636708 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3768 01 110900469 110903822 Amo11g2609 11 133742480 133746937 hybridization
Amo01g3768 01 110900469 110903822 Amo14g0826 14 11451485 11453140 PCT