Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3746 ATGGAGCTCGGCCACAAGTCTGACGACCAGACCATAGAGTGGCTCCTCTGCCAGGCCGAGCCCTCAATCATCGCCACCACCAGAACCACTTCTGCCAGCTTCTCCTCCGTTTCCATCTCCGTACGCGAGGATGCTGGCTCTCTCTCTTCTCCTTCCTCAACCTCTGCAACGTCTTCGCTCGACCACAAGCCCTTGCTCGCCCCCACTCCCTTCATACTCGGCAAGCACATACGCACCGATGATGACATTTTCGCCAAGGACGACGGCGTCTCTGTGGGGCCTGCCGTGGGGTCCTTAGTGGGCCCTGAAGCTCCCGCGGGGCTCTGGGCCCTCCCGGCCAGGCCCAATTTTGGTCAAATTTGGAGTTTCATAGCTGCTCCTCCTCTGCTAGATATAGTTTTGCAGTCAGTGGCAGTGTGGTGTCTTAGCAGCAGCAAGCTTCTTTGTTCGTTCACCATCAGCATTAGGAACAGCAACAAGCCATGGGAGAAGCTTCGGCGGCGAGGCTGGGAAATTACTTTCCTAGACATCTGA 534 0.5674 MELGHKSDDQTIEWLLCQAEPSIIATTRTTSASFSSVSISVREDAGSLSSPSSTSATSSLDHKPLLAPTPFILGKHIRTDDDIFAKDDGVSVGPAVGSLVGPEAPAGLWALPARPNFGQIWSFIAAPPLLDIVLQSVAVWCLSSSKLLCSFTISIRNSNKPWEKLRRRGWEITFLDI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3746 177 ProSiteProfiles TCP domain profile. 1 26 IPR017887 -
Amo01g3746 177 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 2 133 - -
Amo01g3746 177 Pfam TCP family transcription factor 2 55 IPR017887 -
Amo01g3746 177 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 133 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3746 Amo-Chr1 110652131 110652664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3746 2 127 TCP Transcription Factor Family AT5G23280 51.908 5.15e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo01g3746 TCP 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3746 K16221 - cpap:110813909 159.073