Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3733 ATGGATTGTGTTGCCACTGCAATGGATCTTGTCAATGGAGGTAACAGTCTAGCTTCCAAGCAGCGGTTACGCTGGACCAATGACCTCCACGAACGCTTCGTCGATGCGGTTGCTCAACTTGGTGGGTCAGATCGTGCCACACCTAAAGGTGTCCTRAGAGTTATGGGTGTGCAAGGGTTGACAATTTACCATGTCAAAAGTCATTTACAGAAATACCGACTAGCAAAATATCTACCTGGCTCCTCAACTGATGGGAAAAACGCCGAGAAGAAAGAAACAGAGGATGTACTTTCTAATCTTGATGGTTCATCTGGGATGCAAATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTGCATGAGCAATTAGAGGTGCAGAGACAACTACAACTAAGGATAGAAGCGCAGGGTAAATACTTGAAGAAGATTATTGAAGAGCAGCAGCGGCTCGGCGGTGTTCTTATAGAAGCACCTGACTGGGGGGCTACAGCTCTGGTCACAGGAGTTACGCGCCAAGAAGATAATAAGACCCACCAAGCAACCCCTGCCACAACCTCTGAGAGCCCCTTTCTGGAGGTAGCTGTGAAAGAACAAGCCCTGGCTAAGAGTCTTTCAATTGATGAATCKTTTTCATCTCAGCATGAACCTTTGACACCTGATTCTGGTTGCCATGTTGGCAACCCCACTGGCGGCCCTGAAGAGGAGAGATCAACAAAGAAACAGCGCTTGAACATAGATGGATCATATTCTAGACCAGAAATGCTGCTTCCGCATCAAATACTGGAGTCAAATGTCTCATCAAACAAGCAACCAAATGTTGTTTCTACTCCCCAGGAGGAATATGATCATTCAATGGGTATAGCTGCCAAAAGTGTGACAAGGAATTCTAGTAGGGTTGTATGA 912 0.4605 MDCVATAMDLVNGGNSLASKQRLRWTNDLHERFVDAVAQLGGSDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPGSSTDGKNAEKKETEDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVLIEAPDWGATALVTGVTRQEDNKTHQATPATTSESPFLEVAVKEQALAKSLSIDESFSSQHEPLTPDSGCHVGNPTGGPEEERSTKKQRLNIDGSYSRPEMLLPHQILESNVSSNKQPNVVSTPQEEYDHSMGIAAKSVTRNSSRVV* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3733 303 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Amo01g3733 303 Pfam MYB-CC type transfactor, LHEQLE motif 106 152 IPR025756 -
Amo01g3733 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 296 IPR044848 GO:0003700
Amo01g3733 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 2 296 - -
Amo01g3733 303 MobiDBLite consensus disorder prediction 211 245 - -
Amo01g3733 303 MobiDBLite consensus disorder prediction 266 282 - -
Amo01g3733 303 MobiDBLite consensus disorder prediction 266 303 - -
Amo01g3733 303 Gene3D - 19 78 - -
Amo01g3733 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Amo01g3733 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Amo01g3733 303 Coils Coil 109 129 - -
Amo01g3733 303 Pfam Myb-like DNA-binding domain 23 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3733 Amo-Chr1 110499233 110502380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3733 55 271 G2-like Transcription Factor Family AT2G01060 64.516 6.40e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo01g3733 Myb_DNA-binding 4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3733 - - aip:107637104 571.237