LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3722	ATGAGAGGTAACCATGGTGAAAGGTTGAAACTTGATCTCTCCTCAACTCAGATGAACAATGATAGGAATTGCAATAATGATAGCAATAGTAGTGATAATAATAATAGTTGTAACAATAATGGTGTTAGTGGACTCTTGAAGAGGAATAGAATTGCATTTTTTGATAAGGAGTGTTCAAAGGTTGCTGAACATGTTTACCTTGGTGGTGATGCTGTTGCTAAGAATAGGGATATATTGAAACAGAATGGGATCACTCAGATCTTGAACTGTGTTGGTTTTGTGTGCCTCGAGTATTTTAAGGCTGATTTTGTGTATAGAACATTGTGGCTTCAGGATAGTTCTTCAGAGGATATTACTAGTATCTTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGAAACAAGGTGGTAGGGTGTTTGTGCACTGTTGTCAAGGTGTGTCTAGGTCTACTTCGTTGGTGATTGCATACCTCATGGGTATTACCGATCCGAATATGGGGTTTGCTTGCCAGTTGTTGCAGTGCCAAAAGATGGAAAGGGATGCCAGAGCGGAAAGACCCGTTAAAGTGATTAGGGAAGCTCATGAACCTGCTGACTTTTGGAAATCTTACAGTAAAGTAGAAAGTTTCAAATCAAGTGCTAAGGTTCGGCCTGGTGAGAGGAAAGTGGGTTCCTATGATGTTGATTATGAAGTTTTCCAAAAAGCTATTATTGGAGGTTTTGTGCCACCATTTCCATCATCAGAGGATGAACATGAAACCCATCTTTCTGCAAGAGAGAGTAGTTGGAGTGCCTTAAGGCGTAAAGTTTCCTCTTCTCATATGAAGGAGATTGTCACAGTCCCTAAGTCATCTCTCCCAAGGAAGAGAGAGACTAATGGGAGTAAGGGAGTGAGAAAGGGAAGAAAACGCCAACAGAAAGGAAGGAGGAGGTTGCCGGTGTTGATGGTGGCTGACGGAAGCGTGGCTGTGCAGTAG	978	0.4162	MRGNHGERLKLDLSSTQMNNDRNCNNDSNSSDNNNSCNNNGVSGLLKRNRIAFFDKECSKVAEHVYLGGDAVAKNRDILKQNGITQILNCVGFVCLEYFKADFVYRTLWLQDSSSEDITSILYDVFDYFEDVRKQGGRVFVHCCQGVSRSTSLVIAYLMGITDPNMGFACQLLQCQKMERDARAERPVKVIREAHEPADFWKSYSKVESFKSSAKVRPGERKVGSYDVDYEVFQKAIIGGFVPPFPSSEDEHETHLSARESSWSALRRKVSSSHMKEIVTVPKSSLPRKRETNGSKGVRKGRKRQQKGRRRLPVLMVADGSVAVQ*	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3722	325	MobiDBLite	consensus disorder prediction	274	325	-	-
	Amo01g3722	325	SMART	dsp_5	57	178	IPR020422	GO:0006470\|GO:0008138
	Amo01g3722	325	MobiDBLite	consensus disorder prediction	295	310	-	-
	Amo01g3722	325	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	116	197	IPR000387	GO:0016311\|GO:0016791
	Amo01g3722	325	Pfam	Dual specificity phosphatase, catalytic domain	65	174	IPR000340	GO:0008138\|GO:0016311
	Amo01g3722	325	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	5	177	-	-
	Amo01g3722	325	ProSitePatterns	Tyrosine specific protein phosphatases active site.	141	151	IPR016130	GO:0016311\|GO:0016791
	Amo01g3722	325	PANTHER	MKPA PROTEIN	5	177	-	-
	Amo01g3722	325	CDD	DSP	58	174	-	-
	Amo01g3722	325	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	48	178	IPR029021	-
	Amo01g3722	325	Gene3D	Protein tyrosine phosphatase superfamily	35	182	IPR029021	-
	Amo01g3722	325	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	57	213	IPR020422	GO:0006470\|GO:0008138
	Amo01g3722	325	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	180	290	-	-
	Amo01g3722	325	PANTHER	MKPA PROTEIN	180	290	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3722	Amo-Chr1	110450062	110451302	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3722	6	93	Protein tyrosine phosphatase (PTP) family	AT3G55270	59.091	5.30e-23	97.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3722	-		-	adu:110273875	461.455