Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3715 ATGGCAATTGCAGCGCCGAATTCATCTCCGACGATGAGTCTGAGTCACAGCCACAGCCACGAGGACGGGGGGACGACGACGGCGGCCTCCACCACGAACGACAACCTGAACGGAAACGGGAAGCAAGAGGATGATGATCACGAGCATGACATGGTGATGCCGGGGTTTCGTTTTCACCCGACAGAAGAAGAGCTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAACGTTTCAACGTTGAGCTCATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCGTTGGCGGCGATAGGAGAGAAGGAATGGTATTTCTATGTGCCTCGAGACAGAAAATACAGAAACGGAGATCGTCCGAATCGAGTGACGACGTCGGGTTATTGGAAGGCAACGGGAGCAGATAGGATGATAAGGACGGAGAATTTCAGGTCCATCGGGCTGAAGAAAACCCTAGTTTTCTACTCTGGGAAAGCTCCTAAAGGCATCCGTACAAGTTGGATTATGAACGAGTACCGTTTGCCCCAACACGAAACTGAACGATACCAAAAGGCGGAGATATCGCTGTGCCGGGTTTACAAAAGAGCTGGAGTTGAAGATCATCCATCGTTGCCGCGGTGTCTGCCAACGAGGGCTCCATCTTCAAGAACTGTTGATCATCAGAAGAACAAGCAGCAGCACCACAACGATCAACTCAACATGGGATTTGCGGGGAACACCGCCGATGGAGCTTCTGATAATCGTGATCATGATGTAACCACCGCTCTTGCCCTCTCCAAACACAACACAAATGCTTATCGTGCTCCTTCGCTGGGACTCCCACCGCTGCTTCTTCCCTTGGACGACGAAGCCGCCTTCGTCCTCATGCAGCAGCAGCAGCACCATGCTGGCCCTTCTTCAGGAACCACCACCATGATGGATGATCTCAACAGACTTGTAAGCTATCAACACCAGTACTACAACAGCAGCAGTAGCAGTAGTAACAATAATAATCCCAATCATCATCATCACCTGTTAATGCATCAACAACAACAGCAGCAGCAGCAAAATCCTCCTGCAATAATGTCTCTGAATAACACTCCTTCTCCGCTTGCAACCGCCTTCTCTGACCGCCTGTGGGAGTGGAATCCACTCCCGGAGGCCAACCAGCGCCAGTACAGCAACATGTCCTTCAAGTAA 1191 0.5113 MAIAAPNSSPTMSLSHSHSHEDGGTTTAASTTNDNLNGNGKQEDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRAPSSRTVDHQKNKQQHHNDQLNMGFAGNTADGASDNRDHDVTTALALSKHNTNAYRAPSLGLPPLLLPLDDEAAFVLMQQQQHHAGPSSGTTTMMDDLNRLVSYQHQYYNSSSSSSNNNNPNHHHHLLMHQQQQQQQQNPPAIMSLNNTPSPLATAFSDRLWEWNPLPEANQRQYSNMSFK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3715 396 Gene3D NAC domain 61 202 IPR036093 GO:0003677|GO:0006355
Amo01g3715 396 MobiDBLite consensus disorder prediction 324 360 - -
Amo01g3715 396 SUPERFAMILY NAC domain 52 198 IPR036093 GO:0003677|GO:0006355
Amo01g3715 396 ProSiteProfiles NAC domain profile. 52 199 IPR003441 GO:0003677|GO:0006355
Amo01g3715 396 MobiDBLite consensus disorder prediction 1 52 - -
Amo01g3715 396 MobiDBLite consensus disorder prediction 1 38 - -
Amo01g3715 396 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 391 - -
Amo01g3715 396 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 26 391 - -
Amo01g3715 396 Pfam No apical meristem (NAM) protein 54 178 IPR003441 GO:0003677|GO:0006355
Amo01g3715 396 MobiDBLite consensus disorder prediction 208 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3715 Amo-Chr1 110387722 110389736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3715 25 396 NAC Transcription Factor Family AT2G02450 49.539 8.61e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo01g3715 NAM 4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3715 - - gmx:100792622 481.485