Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3705 CTCACAGGATCAGTCCAAAGTCCAAACCCAAACTCTTACCCACACACACTGAAAGCAAGAAGGGTCAAACTTGTATTGTTTGTTGAACAGCTCAGCAGTTCCAAGTCCGAAGCGCCAGATCAAAAACTGGCACAAGTGAAAATCGTTGAGACTCGTGCTCTTTCACTGTTGAACAATTTGGCGCCAAAAATCATGAAGCTCGACAACTCCAACAACTCCAACGGCCAGATTTCCGCCGGCGCCGACGACGACGTATTCGTGCCGCCGCTCAACTTCGCCATGGTCGATCAAGGCATTTTTAGGTCTGGTTTTCCCGACTCTGCCAACTTCAGCTTCTTAAAATCCCTTCGTCTCCGCACTGTTATATGTTTGTGCCCTGAACCGTATCCAGAAGTGACTTCTGAATTTCTCAAGGCCAACGGAATAAAGCTTTATCAATTCGGGATCGATGGATGTAAGGAACCCTTTGTCAACATCCCAGATGACACAGTTCGTGAAGCTTTGAAAGTAGTCCTCGATGTCAGGAACCACCCAGTACTAATTCATTGTAAACGAGGGAAGCATCGCACTGGTTGCCTTGTGGGATGCATCAGAAGATTGCAGAAATGGTGCCTATCTTCTGTATTTGATGAGTACCAAAGGTTTGCAGGCGCCAAGGCCAGAGTTTCGGATCAGAGGTTCATCGAATTGTTTGATATTTCTTGTCTCAAGTCCAACCCGCTCTCATTTTCATGCTCCGGGAAATAG 747 0.4685 LTGSVQSPNPNSYPHTLKARRVKLVLFVEQLSSSKSEAPDQKLAQVKIVETRALSLLNNLAPKIMKLDNSNNSNGQISAGADDDVFVPPLNFAMVDQGIFRSGFPDSANFSFLKSLRLRTVICLCPEPYPEVTSEFLKANGIKLYQFGIDGCKEPFVNIPDDTVREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQKWCLSSVFDEYQRFAGAKARVSDQRFIELFDISCLKSNPLSFSCSGK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3705 248 PANTHER TYROSINE-PROTEIN PHOSPHATASE 73 246 - -
Amo01g3705 248 Pfam Tyrosine phosphatase family 87 239 IPR004861 -
Amo01g3705 248 ProSitePatterns Tyrosine specific protein phosphatases active site. 181 191 IPR016130 GO:0016311|GO:0016791
Amo01g3705 248 PRINTS Plant and fungal dual specificity phosphatase signature 142 156 IPR020428 GO:0016791
Amo01g3705 248 PRINTS Plant and fungal dual specificity phosphatase signature 86 103 IPR020428 GO:0016791
Amo01g3705 248 PRINTS Plant and fungal dual specificity phosphatase signature 159 173 IPR020428 GO:0016791
Amo01g3705 248 PRINTS Plant and fungal dual specificity phosphatase signature 123 136 IPR020428 GO:0016791
Amo01g3705 248 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 233 IPR029021 -
Amo01g3705 248 Gene3D Protein tyrosine phosphatase superfamily 85 235 IPR029021 -
Amo01g3705 248 ProSiteProfiles Dual specificity protein phosphatase domain profile. 91 245 IPR020422 GO:0006470|GO:0008138
Amo01g3705 248 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 73 246 - -
Amo01g3705 248 CDD PFA-DSP_Siw14 86 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3705 Amo-Chr1 110235425 110238400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3705 57 248 Protein tyrosine phosphatase (PTP) family AT4G03960 66.667 5.78e-97 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3705 K18045 - gmx:100785520 324.709