Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3695 ATGCTTACTACTCATCAAGAACCAATCCGCAACAACATGCTCCACACCAACAACACTGGGATATGTTACTTTATGGACATACACAACAACCACCATGGAAGCTCTTCTTCTTCTTCCTCTTCAGCTCTCAAGGCCAAGATCATGTCTCATCCTCACTATCATCGCCTCTTGGCTGCATACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGAATCTGCAGCGGCAATGGCAGCAACTTCTTGCATAGGTGAAGATCCAGCGCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAATAACTTCGCCGGTAATGAAGGTGTTGATAGGAATGGATCATCCGAGGACGATGTTGATTTACAAAACAATGCAATAATTGATCCGCAAGCAGAGGAGCGGGAGCTGAAGGGTCAGCTGTTGCGCAAGTACAGCGGATACCTTGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTACTTGAATGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCAACAGGTTTGGATCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCGGAGGATATGCAGTTTGTGGTGATGGATCAAAGCCATCCACATTATTACATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCCCACACAATGCTTTGA 888 0.4595 MLTTHQEPIRNNMLHTNNTGICYFMDIHNNHHGSSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAAAMAATSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNNFAGNEGVDRNGSSEDDVDLQNNAIIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDQSHPHYYIDNVVANPFPMDFSHTML* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3695 295 Pfam ELK domain 177 198 IPR005539 GO:0003677
Amo01g3695 295 SMART ELK_2 177 198 IPR005539 GO:0003677
Amo01g3695 295 SMART KNOX1_2 41 85 IPR005540 GO:0003677|GO:0005634
Amo01g3695 295 ProSiteProfiles ELK domain profile. 177 197 IPR005539 GO:0003677
Amo01g3695 295 Gene3D - 202 264 - -
Amo01g3695 295 CDD homeodomain 209 261 IPR001356 GO:0003677
Amo01g3695 295 SMART KNOX2_2 88 139 IPR005541 GO:0003677|GO:0005634
Amo01g3695 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 284 - -
Amo01g3695 295 PANTHER - 34 284 - -
Amo01g3695 295 SMART HOX_1 199 264 IPR001356 GO:0003677
Amo01g3695 295 Pfam Homeobox KN domain 217 256 IPR008422 GO:0003677|GO:0006355
Amo01g3695 295 Pfam KNOX2 domain 91 137 IPR005541 GO:0003677|GO:0005634
Amo01g3695 295 ProSiteProfiles 'Homeobox' domain profile. 197 260 IPR001356 GO:0003677
Amo01g3695 295 ProSitePatterns 'Homeobox' domain signature. 235 258 IPR017970 GO:0000981|GO:0006355
Amo01g3695 295 SUPERFAMILY Homeodomain-like 199 274 IPR009057 -
Amo01g3695 295 Pfam KNOX1 domain 42 81 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3695 Amo-Chr1 110028016 110031660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3695 24 295 Homeobox Transcription Factor Family AT1G62360 76.389 2.97e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo01g3695 KNOX2 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3695 - - gmx:547796 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3695 01 110028016 110031660 Amo14g0682 14 9174340 9178625 PCT