Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3690 ATGCTTACTACTCATCAAGAACCAATCCGCAACAACATGCTCCACACCAACAACACTGGGATATGTTACTTTATGGACATACACAACAACCACCATGGAAGCTCTTCTTCTTCTTCCTCTTCATCAGCTCTCAAGGCCAAGATCATGTCTCATCCTCACTATCATCGCCTCTTGGCTGCATACGTCAATTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGAATCTGCAGCGGCAATGGCAGCAACTTCTTGCATAGGTGAAGATCCAGCGCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAATAACTTCGCCGGTAATGAAGGTGTTGATAGGAATGGATCATCCGAGGACGATGTTGATTTACAAAACAATGCAATAATTGATCCGCAAGCAGAGGAGCGGGAGCTGAAGGGTCAGCTGTTGCGCAAGTACAGCGGATACCTTGGTAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAAAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTACTTGAATGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCAACAGGTTTGGATCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCTTCGGAGGATATGCAGTTTGTGGTGATGGATCAAAGCCATCCACATTATTACATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCCCACACAATGCTTTGA 891 0.459 MLTTHQEPIRNNMLHTNNTGICYFMDIHNNHHGSSSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAAAMAATSCIGEDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNNFAGNEGVDRNGSSEDDVDLQNNAIIDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDQSHPHYYIDNVVANPFPMDFSHTML* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3690 296 CDD homeodomain 210 262 IPR001356 GO:0003677
Amo01g3690 296 Pfam KNOX2 domain 92 138 IPR005541 GO:0003677|GO:0005634
Amo01g3690 296 SMART KNOX1_2 42 86 IPR005540 GO:0003677|GO:0005634
Amo01g3690 296 SMART ELK_2 178 199 IPR005539 GO:0003677
Amo01g3690 296 Gene3D - 203 265 - -
Amo01g3690 296 PANTHER - 34 285 - -
Amo01g3690 296 ProSitePatterns 'Homeobox' domain signature. 236 259 IPR017970 GO:0000981|GO:0006355
Amo01g3690 296 ProSiteProfiles 'Homeobox' domain profile. 198 261 IPR001356 GO:0003677
Amo01g3690 296 Pfam Homeobox KN domain 218 257 IPR008422 GO:0003677|GO:0006355
Amo01g3690 296 SUPERFAMILY Homeodomain-like 200 275 IPR009057 -
Amo01g3690 296 SMART KNOX2_2 89 140 IPR005541 GO:0003677|GO:0005634
Amo01g3690 296 SMART HOX_1 200 265 IPR001356 GO:0003677
Amo01g3690 296 Pfam ELK domain 178 199 IPR005539 GO:0003677
Amo01g3690 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 285 - -
Amo01g3690 296 Pfam KNOX1 domain 43 82 IPR005540 GO:0003677|GO:0005634
Amo01g3690 296 ProSiteProfiles ELK domain profile. 178 198 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3690 Amo-Chr1 109963434 109967685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3690 24 296 Homeobox Transcription Factor Family AT1G62360 76.042 3.16e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo01g3690 KNOX2 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3690 - - gmx:547796 458.759