Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3678 ATGGCCACCTTAACCTTCCTCTTAGTTTCTTCAATCCTCTTAACCTTTGTTAATGCATATTCAACATACAACACAACCCAAATTTTCTCAAACTATATCCACAACCCTCCCAAGAATAAACCATTCCTCAACACCATAGACTCTTGCCGCCTAGCCCAAACAAACTGGGCCTCCAATCCACACGCCTTGGCCGATTGCGCTATTGGTTTCGGCCAAGGCGCCATTGGAGGCAAACATGGCAACTTATACATTGTAACCGATCCTTCAGATGATGCTGTGAATCCAACAAAAGGCACGCTTCGTTATGGTGCAATTCAAATGGAGCCACTATGGATAATGTTCGAGAAAGACATGGTTATTAGGCTTGAGAATGAGCTCATAGTGAATAGCTACAAGACCATTGATGGAAGAGGAGCCAAAGTTGAGATATCAAACGGGCCATGCATTACAATACAAGGTGTTAGCAACGTATTATTCATGGCATTAGCATCCATGATTGTCAACCGGGTACGGTTGGCCTCGTCAGAAGTTATGCTACTAGGACACAATGATGAATACACGGCAGATAAAATAATGAAGGTAACAATAGCCTTCAACCGGTTTGCTAGTGGCCTAACTGAAAGAATGCCAAGGGTAAGATTTGGTTACGCCCATGTGGTCAACAACCAATATGATGAGTGGAAAATGTATGCCATAGGAGGGAGTTCTAATCCAACCATTTTAAGCGAAGGAAACGTTTATATAGCACCAAATAACGATAACGCAAAACAGATTACAAAGAGAGAAGCGAAGCAAAACTGGAAGAACTGGAAATGGAGATCTTCCAAGGATGTATTCGTGAATGGTGCATATTTTGTACCATCTGGATATGGGAATTGTGCCCCAAATTATTCAAATACTCAATCTTTTAGTGCTGTCCGAGCGTACATGGTGCCAACAATAACTCTCAATGCAGGTCCCTTAAGTTGTGTTGTTGGCCGAGCATGTTAA 990 0.4232 MATLTFLLVSSILLTFVNAYSTYNTTQIFSNYIHNPPKNKPFLNTIDSCRLAQTNWASNPHALADCAIGFGQGAIGGKHGNLYIVTDPSDDAVNPTKGTLRYGAIQMEPLWIMFEKDMVIRLENELIVNSYKTIDGRGAKVEISNGPCITIQGVSNVLFMALASMIVNRVRLASSEVMLLGHNDEYTADKIMKVTIAFNRFASGLTERMPRVRFGYAHVVNNQYDEWKMYAIGGSSNPTILSEGNVYIAPNNDNAKQITKREAKQNWKNWKWRSSKDVFVNGAYFVPSGYGNCAPNYSNTQSFSAVRAYMVPTITLNAGPLSCVVGRAC* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3678 329 PANTHER PECTATE LYASE 18-RELATED 163 328 IPR045032 GO:0030570
Amo01g3678 329 SMART amb_all 117 253 IPR002022 -
Amo01g3678 329 SUPERFAMILY Pectin lyase-like 64 328 IPR011050 -
Amo01g3678 329 Gene3D - 43 166 IPR012334 -
Amo01g3678 329 Gene3D - 167 322 IPR012334 -
Amo01g3678 329 PANTHER PECTATE LYASE 163 328 - -
Amo01g3678 329 PANTHER PECTATE LYASE 18-RELATED 10 160 IPR045032 GO:0030570
Amo01g3678 329 Pfam Pectate lyase 175 247 IPR002022 -
Amo01g3678 329 PANTHER PECTATE LYASE 10 160 - -
Amo01g3678 329 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Amo01g3678 329 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Amo01g3678 329 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3678 Amo-Chr1 109820083 109822003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3678 4 323 Polysaccharide Lyase AT4G22080 46.015 4.80e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3678 K01728 - gmx:100807483 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3678 01 109820083 109822003 Amo11g2759 11 137219319 137221269 hybridization