LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3630	ATGAGAGGTAATCCTGGTGAAAGATTGAATCTTGATCTCTCCTCAATTCAGATGAACAATAATAGGAATTGCAATAATGGCAGTAATAGTAGTGGTAATAATAATAGTTGTAACAATAATGGTGTTAGTAGACTCTTGAAGAGGGATAGAATTGTATTTTTTGATAAGGAGTGTTCAAAGGTTGCTGAACATGTTTACCTTGGTGGTGATGCTGTTGCTAAGAATAGGGATATATTGAAACAGAATGGGATCACTCATATCTTGAACTGTGTTGGTTTTGTGTGCTCCGAATATTTTAAGGCTGATTTTGTGTATAGAACATTGTGGCTTCAGGATAGTCCTTCAGAGGATATTACTAGTATCTTATATGATGTGTTTGATTACTTTGAGGATGTTAGGAAACAAGGTGGTAGGGTGTTTGTGCACTGTTGTCAAGGTGTGTCTAGGTCTACTTCGTTGGTGATTGCATACCTCATGAAAGTGGGCTGCTATGATGTTGATTATGAAGTTTTCCAAAAAGCTATTGTTGGAGGTTTTGTGCCACCATTTCCATCATCAGAGGATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGCCTTAAGGCGTAAAGTTTCCTCTTCTCATATGAAGGAGATTGTCACAGCCCATAAGTCATCCCTCCCAAGGGGAGTGAGAAAGGGAAGAAGACGCGAAAAGAGAGGAAGGAGGAAGTCGCCGGCATTGATGGTGGCTGACAGAGGCGCCGCTATGCGGCAGTGA	771	0.4099	MRGNPGERLNLDLSSIQMNNNRNCNNGSNSSGNNNSCNNNGVSRLLKRDRIVFFDKECSKVAEHVYLGGDAVAKNRDILKQNGITHILNCVGFVCSEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVRKQGGRVFVHCCQGVSRSTSLVIAYLMKVGCYDVDYEVFQKAIVGGFVPPFPSSEDEHETHLPARESSWSALRRKVSSSHMKEIVTAHKSSLPRGVRKGRRREKRGRRKSPALMVADRGAAMRQ*	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3630	256	MobiDBLite	consensus disorder prediction	219	256	-	-
	Amo01g3630	256	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	57	203	IPR020422	GO:0006470\|GO:0008138
	Amo01g3630	256	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	116	160	IPR000387	GO:0016311\|GO:0016791
	Amo01g3630	256	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	160	225	-	-
	Amo01g3630	256	Gene3D	Protein tyrosine phosphatase superfamily	34	175	IPR029021	-
	Amo01g3630	256	PANTHER	MKPA PROTEIN	4	159	-	-
	Amo01g3630	256	PANTHER	MKPA PROTEIN	160	225	-	-
	Amo01g3630	256	ProSitePatterns	Tyrosine specific protein phosphatases active site.	141	151	IPR016130	GO:0016311\|GO:0016791
	Amo01g3630	256	MobiDBLite	consensus disorder prediction	225	240	-	-
	Amo01g3630	256	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	4	159	-	-
	Amo01g3630	256	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	48	167	IPR029021	-
	Amo01g3630	256	Pfam	Dual specificity phosphatase, catalytic domain	65	167	IPR000340	GO:0008138\|GO:0016311
	Amo01g3630	256	CDD	DSP	58	160	-	-
	Amo01g3630	256	SMART	dsp_5	57	193	IPR020422	GO:0006470\|GO:0008138

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3630	Amo-Chr1	109219587	109220759	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3630	6	93	Protein tyrosine phosphatase (PTP) family	AT3G55270	56.818	8.33e-23	95.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3630	-		-	aip:107613560	290.426