Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3629 ATGAAAATGAAGTCCCTCTTATATCCGACCCTGTTGTCATTGCTGCTTTGGCACGTGGCGGTGGTATCAGCTGCAAGGCTGAACATGGCTAGCGATGAATCGGCCTTGGTTGCCATGAGGGAGCATTTTAACTCCTTGGATCCCAACAATGTGCTCGCAAGCAACTGGTCCAGCAGTACCTCTGTTTGCAACTGGATTGGCCTCACCTGCGGCTCTTCCCACCGCAGAGTAACTGCCTTGAATCTCTCATACATGTCTCTTGATGCCACCATCCCTCCGCATCTTGGAAACCTGTCATTCCTTTCTCGCCTGCATCTTCCCAACAATAGCTTCCACGGTAATCTACCTGCTGAACTTGCTGGATTACGTAGTCTGAGCATCATCAACCTTAGATTCAACAAATTCACTGGAAGTATCCCCTCCTGGTTTGAATCTCTACGGAAACTAAAACACCTGTTACTGGCAGGCAATAGTTTCACTGGCACAGTCCCACACTTCCTGTTCAACATGAGTTCCCTGCAATCGCTTGAACTTCTTGAAAACAAGTTTTGGGGTCCCTTACCTTCCAACATTTTCTTGTCTCCTTCTTTGCAATATCTGTATCTTACTTACAACCAAATTTCAGGAGCTATCCCTTCAGCTATCATCAACAGTTCGTTACTGCAGGTTATTGACCTCGACTACAACAACCTATCCGGACAACTGCCGGAGCGCATCTTCCACCATCTTCCAAACTTGAAAGAGCTTCACGTGACTAGTAATACCTTATCCGGTGAACTTCCACGCAGTTTGTTCAATTGCAAGCAACTGCAATATTTATCCTTATCCTACAACACCTTCGAATATGGACTTGAGGGAAGAGTGTCTAGGCAAGGTGATGTGTATAGCTATGGAATTTTACTTATGGAGACCTTCACACAGAAAAAACCCACTGATGAAATGTTTGTGGGAGAGTTTAGCATCAAAGAGTGGGTGAAAATGTCGTGCCCTAATTCACTACTTGATATCGTTGATGCAAAATTATTGGTGGAAGAAGGAGAAACAGATACTAAACAGGACTGCTTGTTGTCTATAATGACTTTAGCTCTGAATTGCTCAGCTGAGTCTCCGGGTGAAAGGACAAGAATGAAAGACGCTATGAATGCTCTTAAAAAGATTAAAAGATTACTCTTGAACTAA 1179 0.4411 MKMKSLLYPTLLSLLLWHVAVVSAARLNMASDESALVAMREHFNSLDPNNVLASNWSSSTSVCNWIGLTCGSSHRRVTALNLSYMSLDATIPPHLGNLSFLSRLHLPNNSFHGNLPAELAGLRSLSIINLRFNKFTGSIPSWFESLRKLKHLLLAGNSFTGTVPHFLFNMSSLQSLELLENKFWGPLPSNIFLSPSLQYLYLTYNQISGAIPSAIINSSLLQVIDLDYNNLSGQLPERIFHHLPNLKELHVTSNTLSGELPRSLFNCKQLQYLSLSYNTFEYGLEGRVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFSIKEWVKMSCPNSLLDIVDAKLLVEEGETDTKQDCLLSIMTLALNCSAESPGERTRMKDAMNALKKIKRLLLN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3629 392 Gene3D Ribonuclease Inhibitor 190 251 IPR032675 -
Amo01g3629 392 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 281 387 - -
Amo01g3629 392 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 147 280 - -
Amo01g3629 392 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 6 147 - -
Amo01g3629 392 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Amo01g3629 392 Gene3D Transferase(Phosphotransferase) domain 1 252 390 - -
Amo01g3629 392 Pfam Leucine Rich repeat 194 210 IPR001611 GO:0005515
Amo01g3629 392 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Amo01g3629 392 Pfam Leucine rich repeat 221 278 IPR001611 GO:0005515
Amo01g3629 392 SUPERFAMILY Protein kinase-like (PK-like) 271 387 IPR011009 -
Amo01g3629 392 SUPERFAMILY L domain-like 35 280 - -
Amo01g3629 392 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 281 387 - -
Amo01g3629 392 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 147 280 - -
Amo01g3629 392 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 147 - -
Amo01g3629 392 Pfam Protein tyrosine and serine/threonine kinase 268 382 IPR001245 GO:0004672|GO:0006468
Amo01g3629 392 SMART LRR_typ_2 243 267 IPR003591 -
Amo01g3629 392 SMART LRR_typ_2 122 145 IPR003591 -
Amo01g3629 392 SMART LRR_typ_2 195 218 IPR003591 -
Amo01g3629 392 SMART LRR_typ_2 219 242 IPR003591 -
Amo01g3629 392 SMART LRR_typ_2 146 170 IPR003591 -
Amo01g3629 392 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3629 Amo-Chr1 109192887 109196319 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3629 274 388 Receptor kinase-like Gene Family AT3G47570 37.069 9.87e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo01g3629 PK_Tyr_Ser-Thr 1.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3629 - K13420 ahf:112722956 704.516