LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3628	ATGAGCCCAAATCCTTCCACAAATCAGCCACCTCCAACCCCAACCACCTCATGTGCCCCTGACTCCCTCTTCCACCACCACCTACTCTGCCCCTCCTCTCCTTGCCCCATCTTCCTCCCTCTCTACCTCTGCCCTTTTCTTCTTCCTTCGTCCTTTTTTCTTTCCATTCTTCTTCCTCGGTCCCTGCCTCCATCACCGCCGCACAGCCGCGCCTCCGTCAGCCACCATCAACGCCGACGACCTCCTCCTTCCTCTCGCACCAGCACCGCTTCCAGCAATAACCCATCCGGTGAGGCGGATCCAAATTCCTGCGGCGGAGACACTGTCACCGGCCAGAATCGCAAGTTCTGTCCGCTGCCACTTACGCCGCGATTGCAGCAGAGTTCCAAGTCCCGGTCGAGCCTGCCGCCCCTCCAGCCGCTTTCGATAGCCCGGCGGAGCCTCGATGAGTGGCCGCAGGCGAGCTCAGATGACATTGGGGAGTGGTTGCCCCCACAGCCGCCGTTGACCACCGGTGGCGCCATGAGAGGTAACCCTGGTGAAAGGTTGAAACTTGATCTCTCCTCAATTCAGATGAACAATGATAGGAATTGCAATAATGGCAGTAATAGTAGTGGTAATAATAATAGTTGTAACAATAATGGTGTTAGTGGACTCTTGAAGAGGGATAGAATTGCATTTTTTGATAAGGAGTGTTCAAAGGTTGCTGAACATGTTTACCTTGGTGGTGATGCTGTTGCTAAGAATAGGGATATATTGAAACAGAATGGAATCACTCATATCTTGAACTGTGTTGGTTTTGTGTGCCCCGAGTATTTTAAGGCTGATTTTGTGTATAGAACATTGTGGCTTCAGGATAGTCCTTCAGAGGATATTACTAGTATCTTGTATGATGTGTTTGATTACTTTGAGGATGTTATGGAACAAGGTGGTAGGGTGTTTGTGCACTATTGTCAAGGTGTGTCTAGGTCTACTTCGTTGGTGATTGCATACCTCATGTGGAGAGAAGGACAGAGCTTTGATGATGCTTTTCAGTTGGTGAAGGCTGCAAGGGGTATTGCCGATCCGAATATGGGGTTTGTTTGCCAGTTGTTGCAGTGCCAGAAGAGGGTGCATGCAGTTCCTCTTAGTCCTACCTCTTTGCTTAGGATGTATAGGAWGGCTCCACACTCGCCTTATGATCCTTTGCATCTCGTCCCCAAAATGTTAACGGATCCTTCGCCTTCCGCATTGGACTCCAGGGGAGCTTTTTTTAGGAAAGTGGGCTGCTATGATGTTGATTATGAAGTTTTTCAAAAAGCTATTGTTGGAGGTTTTGTGCCACCATTTCCATCATCAGAGGATAAACATGAAACCCATCTTCTTGCAAGAGAGAGTAGTTGGAGTGCCTTAAGGCGTAAAGTTTTCTCTTCTCATATGAAGGAGATTGTCACAGCCCCTAAGTCATCCCTCTCAAGGATTTATTCCGATTTCATGTTGTGTATTCATTCAACAAAAACTTCATCTCCATCCTCATCATCTATATCATCATCTTCGCCCTCGTAT	1545	0.4809	MSPNPSTNQPPPTPTTSCAPDSLFHHHLLCPSSPCPIFLPLYLCPFLLPSSFFLSILLPRSLPPSPPHSRASVSHHQRRRPPPSSRTSTASSNNPSGEADPNSCGGDTVTGQNRKFCPLPLTPRLQQSSKSRSSLPPLQPLSIARRSLDEWPQASSDDIGEWLPPQPPLTTGGAMRGNPGERLKLDLSSIQMNNDRNCNNGSNSSGNNNSCNNNGVSGLLKRDRIAFFDKECSKVAEHVYLGGDAVAKNRDILKQNGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVMEQGGRVFVHYCQGVSRSTSLVIAYLMWREGQSFDDAFQLVKAARGIADPNMGFVCQLLQCQKRVHAVPLSPTSLLRMYRXAPHSPYDPLHLVPKMLTDPSPSALDSRGAFFRKVGCYDVDYEVFQKAIVGGFVPPFPSSEDKHETHLLARESSWSALRRKVFSSHMKEIVTAPKSSLSRIYSDFMLCIHSTKTSSPSSSSISSSSPSY	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3628	515	MobiDBLite	consensus disorder prediction	64	213	-	-
	Amo01g3628	515	PANTHER	MKPA PROTEIN	419	511	-	-
	Amo01g3628	515	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	223	372	IPR029021	-
	Amo01g3628	515	SMART	dsp_5	231	370	IPR020422	GO:0006470\|GO:0008138
	Amo01g3628	515	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	84	417	-	-
	Amo01g3628	515	PANTHER	MKPA PROTEIN	84	417	-	-
	Amo01g3628	515	MobiDBLite	consensus disorder prediction	122	140	-	-
	Amo01g3628	515	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	231	373	IPR020422	GO:0006470\|GO:0008138
	Amo01g3628	515	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	290	351	IPR000387	GO:0016311\|GO:0016791
	Amo01g3628	515	Gene3D	Protein tyrosine phosphatase superfamily	206	373	IPR029021	-
	Amo01g3628	515	MobiDBLite	consensus disorder prediction	187	213	-	-
	Amo01g3628	515	CDD	DSP	232	366	-	-
	Amo01g3628	515	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	419	511	-	-
	Amo01g3628	515	Pfam	Dual specificity phosphatase, catalytic domain	239	369	IPR000340	GO:0008138\|GO:0016311
	Amo01g3628	515	MobiDBLite	consensus disorder prediction	83	110	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3628	Amo-Chr1	109190684	109192265	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3628	88	267	Protein tyrosine phosphatase (PTP) family	AT3G55270	51.381	1.26e-45	169

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3628	-		-	aip:107613560	667.151