Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3627 ATGAAAATGAAGTCCCTCTTATATCCGACCCTGTTGTCATTGCTGCATTGGCACGTGGTGGTGGTATCAGCTGCAAGGCTGAACATGGCTAGCGATGAATCGGCCTTGGTTGCCATGAGGGAGCATTTTAACTCCTTGGATCCCAACAATGTGCTCGCAAGCAACTGGTCTAGCACTACCTCTGTTTGCAACTGGATTGGCGTCACATGCGGCTCTTCCCACCGCAGAGTAACYGCCTTGAATCTCTCATACATGGCTCTTGATGCCACCATCCCTCCGCATCTTGGAAACCTGTCATTTCTTTCTTGCCTGCGTCTTCCCAACAATAGCTTCCATGGTACTCTACCTGCTGAACTTGCTGGATTACGTAGACTGAGCATCATCAACCTCAGATTCAACAAATTCACAGGAAGCATCCCGTCCTGGTTTGAGTCTCTACCCAAACTAAAATACCTGTTACTGAGAGGGAACAGTTTCTCTGGCACAGTCCCACACTTTCTGTTCAACATGACTTCCCTGCAATATCTTGTACTTTCTGATAACCAGTTTTGGGGTCCCTTACCTTCCAACATTTTCTTGTCTCCTTCTTTGCAATATCTGTATCTTACTCACAACCAAATTTCAGGAGCTATCCCTTCAGCTATCATCAACAGTTCGTTACTGCAGGTTATTGACCTCGACTACAACAACCTATCCGGAAAACTGCCAGAGCGCATCTTCCACCATCTTCCAAACTTGAAAGGGCTTTACGTGTATAGTAATGCCTTATCCGGTGAACTTCCACGCAGTTTGTTCGATTGCAAGCAACTGCAATATTTATCCTTATCCTACAACACCTTCGGTGGAAACATACCATCTGCCATCGGGAATTTAACAAGCCTCAAAGAGATCTATCTTGGCCATAACAATTTTAGAGGTATCGTATGTCATGCCAATATGACTCTCCGAATTGAGTTTGATTATCTTTATCATTATTTATGCAATTTAACATATGTTGTGGCAGGTGCAATACCAAATGAGATTGGTAATCTACGTAGTTTAGAGATTATGAGTCTTCCTTTCGCCAATGTGAGTGGCTACATTCCGCCATCAATCTTTAATATTTCTACCCTACAGGAAATTACAGTTACTGGAGATCATTTATCAGGCAGCCTCCCAGCAAACCTAGGCTCCATGCTTCCAAAACTTGTTAGGCTGTACATGGGGATTAATTATCTCAGTGGAAGAATCCCAAGCTCCTTGTGCAATGCCACTATGCTTAATACCATAGATTTGGCTTACAATTCATTTTCTGGATATATTCCAGACATTTTTGGCAGCTTAAGAAGTCTCCAGCTGCTCAATCTTGGTGCAAATAATTTGACAAGTGATGCATCCGATTCAGAGCTAAGCATTATAAATTCTTTGACAAATTGTAGATTTCTCAAAAAGTTGATATTTTCTGGAAATCCATTGGATTCTATTCTTCCAATATCGGTAGGAAACCTTTCTACTTCTCTGGATGACTTGAATCTTAAGAGTTGTTCAATGAGAGGCACCATTCCAGCAAGTATTGGCAACTTGAGCAGCTTGATAAACCTTGACTTTGGTGATAATAATTTTGTTGGAACCTTTCCTACTAGCATAGGGAAATTAATAAAGCTACAAGGCCTCTTTTTAGATGGCAACCAATTGGAAGGATTTGTTCCGAATCAATTGTGTCAACTAACGAGCTTGTATAAATTTTCCATTATAAGCAACAAGTTCTCTGGCCCTATACCTTCTTGCTTAGGGAATCTTACCTCATTGAGATGGCTTTGGCTTTCTTCAAATAAATTCAACTCAATACCTTCCACCTTGTGGGGGCTGTCCGATTTATTGCTTTTAGACTTATCTTCCAATAATTTAAGTGGATATCTCCCAWTAGATAGTGGAAATCTAAAAGCCATARGTTGGATTTATTTATCAGGAAATCAATTTTCAGGTAGCATCCCAAGAAGCCTCAGCAATCTTATGAATTTGGTTCTTCTTACCTTAGCAAGAAACAAATTTGAAGGGCCCATCCCAGAATCATTTGGTCGTATGGTAAGTTTGGAACAACTTGACTTATCAGAAAATAACTTGTCTGGTGTCATTCCTAAAACATTGGAGGCACTTGTGTATCTGAAATATTTCAATGTTTCTCACAATAARTTAAAAGGAAAAATCCCGGATGGGGGACCTTTTGCAAACTTCTCAGCTCAGTCGTTCATGGGGAATAAAGAATTATGTGGTGCTCCACGTTTCCATTTTTCGGAATGTAAAATTGAAAAATCCCGAAAATGGAATGCACATATTGTGTTGACATATGTTTTACCTGCAGCAATAGTTGTCACCCTTCTTGTGGCATTCCTTTGCATCCTAAAATTCCGGAAGCACAAGGTGGTCAACAATTCAGAGGTGAATCAATCAGGAGAAAGATGGAGAAGAATATCATACTATGAAATTCAGCAAGCAACAGATAGGTTCAATGATGGCAACTTGCTTGGTGTAGGGAGTTTTGGAAGAGTGTATAAAGGAGTACTCTCAGATGGGACGAATGTTGCAGTAAAAGTGTATAATCTGGGGCTAGAAGGAGCATTTAGGAGTTTTGATGCTGAATGTGAGATATTGCGCAGTGTCCGCCATCGAAACTTAACCAAAATCATTAGCAGCTGCAGCAACATGGACTTCAAGGCATTGATCCTAAGCTACATGCCTAATGGGAGTTTAGAGAGGTGGCTACACTCGGAACACCATAGCTTGAGTATGATCCAGAGGCTAAACATAATGATAGATGTTGCAGAAGCAATGGATTATCTGCACAATGGTGGTTCTGCACCAATTATACATTGTGATTTGAAACCGAGCAACATATTACTAGATGAAGACATGGTTGCCCATGTGGCTGATTTTGGCATTGCAAAATTGCTGAGTGGGGATGACTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCCCTGAATATGGACTTGAGGGAACAGTGTCTAGACAAGGTGATGTGTATAGCTATGGAATTTTACTAATGGAGACCTTCACACAGAAAAAACCCACTGCTGAAATGTTTGTGGGAGAGTTTAGCATCAAAGAGTGGGTGAAAATGTCATGCCCTGATTCACTACTTGATATCATTGATGCAAAATTATTAGTGGAAGAAGGAGAGCCAAATACCACACAGGATTGCTTGTTGTCTATAATGACTCTAGCTCTGGATTGCTCAGCTGAGTCACCTGGGCTAAGGACAAATATAAAAAGTGTTGTGGTTGCGCTCAAGAAGATTAAAAGATTACTCTTGAACTAA 3330 0.4075 MKMKSLLYPTLLSLLHWHVVVVSAARLNMASDESALVAMREHFNSLDPNNVLASNWSSTTSVCNWIGVTCGSSHRRVTALNLSYMALDATIPPHLGNLSFLSCLRLPNNSFHGTLPAELAGLRRLSIINLRFNKFTGSIPSWFESLPKLKYLLLRGNSFSGTVPHFLFNMTSLQYLVLSDNQFWGPLPSNIFLSPSLQYLYLTHNQISGAIPSAIINSSLLQVIDLDYNNLSGKLPERIFHHLPNLKGLYVYSNALSGELPRSLFDCKQLQYLSLSYNTFGGNIPSAIGNLTSLKEIYLGHNNFRGIVCHANMTLRIEFDYLYHYLCNLTYVVAGAIPNEIGNLRSLEIMSLPFANVSGYIPPSIFNISTLQEITVTGDHLSGSLPANLGSMLPKLVRLYMGINYLSGRIPSSLCNATMLNTIDLAYNSFSGYIPDIFGSLRSLQLLNLGANNLTSDASDSELSIINSLTNCRFLKKLIFSGNPLDSILPISVGNLSTSLDDLNLKSCSMRGTIPASIGNLSSLINLDFGDNNFVGTFPTSIGKLIKLQGLFLDGNQLEGFVPNQLCQLTSLYKFSIISNKFSGPIPSCLGNLTSLRWLWLSSNKFNSIPSTLWGLSDLLLLDLSSNNLSGYLPXDSGNLKAIXWIYLSGNQFSGSIPRSLSNLMNLVLLTLARNKFEGPIPESFGRMVSLEQLDLSENNLSGVIPKTLEALVYLKYFNVSHNKLKGKIPDGGPFANFSAQSFMGNKELCGAPRFHFSECKIEKSRKWNAHIVLTYVLPAAIVVTLLVAFLCILKFRKHKVVNNSEVNQSGERWRRISYYEIQQATDRFNDGNLLGVGSFGRVYKGVLSDGTNVAVKVYNLGLEGAFRSFDAECEILRSVRHRNLTKIISSCSNMDFKALILSYMPNGSLERWLHSEHHSLSMIQRLNIMIDVAEAMDYLHNGGSAPIIHCDLKPSNILLDEDMVAHVADFGIAKLLSGDDSITQTMNLATIGYMAPEYGLEGTVSRQGDVYSYGILLMETFTQKKPTAEMFVGEFSIKEWVKMSCPDSLLDIIDAKLLVEEGEPNTTQDCLLSIMTLALDCSAESPGLRTNIKSVVVALKKIKRLLLN* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3627 1109 Gene3D Ribonuclease Inhibitor 314 460 IPR032675 -
Amo01g3627 1109 Gene3D Ribonuclease Inhibitor 461 769 IPR032675 -
Amo01g3627 1109 ProSitePatterns Protein kinases ATP-binding region signature. 835 857 IPR017441 GO:0005524
Amo01g3627 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Amo01g3627 1109 Gene3D Phosphorylase Kinase; domain 1 799 904 - -
Amo01g3627 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 149 288 - -
Amo01g3627 1109 SMART LRR_typ_2 545 569 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 441 464 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 195 218 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 243 267 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 219 242 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 688 711 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 122 145 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 616 640 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 291 311 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 170 194 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 393 417 IPR003591 -
Amo01g3627 1109 SMART LRR_typ_2 593 615 IPR003591 -
Amo01g3627 1109 ProSiteProfiles Protein kinase domain profile. 829 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3627 1109 SUPERFAMILY L domain-like 243 491 - -
Amo01g3627 1109 SUPERFAMILY L domain-like 498 754 - -
Amo01g3627 1109 Pfam Protein kinase domain 830 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3627 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 149 288 - -
Amo01g3627 1109 Gene3D Ribonuclease Inhibitor 239 313 IPR032675 -
Amo01g3627 1109 SUPERFAMILY L domain-like 36 311 - -
Amo01g3627 1109 Pfam Leucine rich repeat 595 653 IPR001611 GO:0005515
Amo01g3627 1109 Pfam Leucine rich repeat 666 725 IPR001611 GO:0005515
Amo01g3627 1109 Pfam Leucine rich repeat 221 278 IPR001611 GO:0005515
Amo01g3627 1109 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Amo01g3627 1109 Gene3D Transferase(Phosphotransferase) domain 1 905 1107 - -
Amo01g3627 1109 Gene3D Ribonuclease Inhibitor 142 189 IPR032675 -
Amo01g3627 1109 Gene3D Ribonuclease Inhibitor 190 238 IPR032675 -
Amo01g3627 1109 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Amo01g3627 1109 SMART serkin_6 829 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3627 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 291 1104 - -
Amo01g3627 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 6 148 - -
Amo01g3627 1109 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 267 310 - -
Amo01g3627 1109 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Amo01g3627 1109 ProSiteProfiles Leucine-rich repeat profile. 595 617 IPR001611 GO:0005515
Amo01g3627 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 148 - -
Amo01g3627 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 267 310 - -
Amo01g3627 1109 SUPERFAMILY Protein kinase-like (PK-like) 804 1100 IPR011009 -
Amo01g3627 1109 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 291 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3627 Amo-Chr1 109139024 109142462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3627 484 738 Receptor kinase-like Gene Family AT3G47570 35.019 9.43e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo01g3627 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3627 - K13420 aip:107613554 1935.61