Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3625 ATGTCCATGGAGACTCACAGTTTCTCCCTTGGGGTCAGGGTCGCGCCATTTGTAAAGCGAACTGTAACGGTTTATCATGTGCCTCGCTTACGTAACCTTAATCGAACCCACCCTGCAGCTCAGTGCATTCTTCCACAACCACCACTTACTAACCATTCTCCCACTTTGCGAGATATATGCCAGCCTCATGTCCCCACCCATATTTTGCAAAGGATGGAAGAGATTGGATATGTGATGCCTACAGATGTTCAGAGGGAGGCTTTGCCTCATCTTTTCTCTGGCCGTGACTGTATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATTTATTCCATCATCAACACTTTGAAATCTTCTGTGCAAGCGCTTGTTGTCGTCCCCACTCGTGAACTTGGCATGCAAGTCACTAAAGTTGCAAGGATGTTGGCAGCAAAGCCAACTGGAGTCGACGGGGAGCAGAAGTCGTGTACCATCATGGCTCTCTTGGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAAATTTTCTTGCTTGAATCTGTGCGGGTGCTAATTGTTGATGAGGTTGACTTCATTTTCAGTTCTTCAAAGCAAGTTAGTTCTCTTAGAAAGCTTTTGACTTCATATTCATCGTGCAATAACCGTCAGACAGTTTTTGCAAGTGCATCTATACCACAGCACAGACGATTTCTTCACGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATCCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTGTGTCATAGATTTATAATATGCAATAACAAAAGGAAACTACAAACCCTATTATCCTTGATTCAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAAGGCTGGAAACGCTCCATCAACAGACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGATATTGTCCTTCTCGAGGATGACATGAATTTCAACTCACGCGCAGTTTCATTGTTGGAGGTTCGAAAAGGAGGTGGATATCTGCTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCCATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACCATTACAGTTCCCGAGGAGAGGTTTGTTCTGCAGAAATATGAAAATGAGTTGATGTTTAACTCTGAGGAGCTTATTCCATAA 1371 0.4354 MSMETHSFSLGVRVAPFVKRTVTVYHVPRLRNLNRTHPAAQCILPQPPLTNHSPTLRDICQPHVPTHILQRMEEIGYVMPTDVQREALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTLKSSVQALVVVPTRELGMQVTKVARMLAAKPTGVDGEQKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLERQIFLLESVRVLIVDEVDFIFSSSKQVSSLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTDLVIDFLKTSYEGPLDIVLLEDDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTTITVPEERFVLQKYENELMFNSEELIP* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3625 456 Gene3D - 53 271 IPR027417 -
Amo01g3625 456 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 48 455 - -
Amo01g3625 456 CDD SF2_C_DEAD 289 418 - -
Amo01g3625 456 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 270 IPR014001 -
Amo01g3625 456 CDD DEADc 68 263 - -
Amo01g3625 456 Gene3D - 284 455 IPR027417 -
Amo01g3625 456 Pfam DEAD/DEAH box helicase 81 254 IPR011545 GO:0003676|GO:0005524
Amo01g3625 456 SMART helicmild6 336 420 IPR001650 -
Amo01g3625 456 Pfam Helicase conserved C-terminal domain 299 418 IPR001650 -
Amo01g3625 456 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 455 - -
Amo01g3625 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 422 IPR027417 -
Amo01g3625 456 SMART ultradead3 76 286 IPR014001 -
Amo01g3625 456 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 299 456 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3625 Amo-Chr1 109131124 109134195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3625 50 445 Eukaryotic Initiation Factors Gene Family AT1G72730 26.420 6.18e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3625 - - ahf:112763379 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3625 01 109131124 109134195 Amo14g0871 14 12188946 12192241 PCT