Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3624 ATGCCCACTTCCGACGACTGCTCCGATGACGCCTGCAGCATTTGTCTTGAACCCTACACCGCCAACGACCCCGCCACTATTACCAGTTGCAAACATGATTATCATCTGCATTGTATTATTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTAGCTTAAAAGACCCCACCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAATATCCAGGAATGAACATTCATCTTCATACGCCAGCTCTCCTAGTCCCCTTGAACGACTCAATGATGATCATGATTATCCTTGTTCAGATGACTCTGATCTTGATGAGCAACTTATGCAACACCTAGATGCTACTGCAGCAAGCACAACTGGTCATATTCACACACGAAAAAGGCAGAGATATTATGGTGCAGGTCCATCAGAGGTGCTTGTTTCAAATTCTTCTATTCCAGCTTCTAGGATTCAGCCACCATCTGAGGGTAGTGTTTCATCATCTTCTGAGAGTGAAGTCTCTTTAAAGCCCAGGAAGCTCATGTTGGTCTTAGAGTCTAATCACTCAATTCATTTCTCCTGCTGTTTTAGCTGGCAACCACTTGAGAGTGATAGGAGAGTGAACACTGCTGAAATGTTCTCCTTCCCCAAGTCCATCAAGTCCAAATTTTCTGCTGCTTCGGCAAGATATAAGGAATCAATTTCAAAAAGCACTCGAGGCCTTAAAGAGAAGTTGATTGCTCATAATGCCTCAGTGAAAGAGCTCAGTAAAGGTGTTCGGCGTGAGATGAACGTAGGCATTGCTGGTGTTGCAAAGATGATCGAACGTCTTGATCTTTCGTCGAAACGGTCAAGTACCATCAGGCCAGTCAATGGTGGTAGGGGCATCTCTATCATCCCCTTCAAAGGGAAGTCTGTCCAGCAGAATAATGCCATTGAGCAGCAGCAATCTGGAGTTTTGGTTTGTCATATTAGTTCAGACTCTCCATCTCTTGTTCCTCCTCCAACTCCAAGTGTTCAGGAGCCTTTCACATGCCGATACTTGCATTGA 1050 0.4505 MPTSDDCSDDACSICLEPYTANDPATITSCKHDYHLHCIIEWSQRSKECPICWQLLSLKDPTSQELLAAVEAEKRLISRNEHSSSYASSPSPLERLNDDHDYPCSDDSDLDEQLMQHLDATAASTTGHIHTRKRQRYYGAGPSEVLVSNSSIPASRIQPPSEGSVSSSSESEVSLKPRKLMLVLESNHSIHFSCCFSWQPLESDRRVNTAEMFSFPKSIKSKFSAASARYKESISKSTRGLKEKLIAHNASVKELSKGVRREMNVGIAGVAKMIERLDLSSKRSSTIRPVNGGRGISIIPFKGKSVQQNNAIEQQQSGVLVCHISSDSPSLVPPPTPSVQEPFTCRYLH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3624 349 MobiDBLite consensus disorder prediction 150 171 - -
Amo01g3624 349 Pfam Ring finger domain 11 52 IPR001841 -
Amo01g3624 349 ProSiteProfiles Zinc finger RING-type profile. 12 52 IPR001841 -
Amo01g3624 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 4 333 - -
Amo01g3624 349 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 333 - -
Amo01g3624 349 SMART ring_2 12 52 IPR001841 -
Amo01g3624 349 MobiDBLite consensus disorder prediction 78 101 - -
Amo01g3624 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Amo01g3624 349 SUPERFAMILY RING/U-box 7 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3624 Amo-Chr1 109128540 109130725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3624 3 60 C3H Transcription Factor Family AT5G15790 43.103 1.69e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3624 K19043 - gmx:100775754 323.168