Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3617 ATGGGAATCTCTTGGAGCAACACCAACAGTAACAGTAACAGAAGAAGAAGAAACAATTACCCACCTCCTTTTCCTCCTCCGTACTACTACTCTTCTGATGCTCATCCTCCGCAGCTTCCACCGCCGCCGCCGCCTTCTCAGCCCCCACCGCCGCAAGGCTATTACTTTCCCCCAACCAACCCTTCCACCACTCCCTACGGTGCTCCCGCCTGGGCCCCTGTTCGCCCCCCCGTTGCTGCTGCCGCCGCCGCAGCTCCACCGCCCTATGTCGACCATCAAACCACTAAGAAGATTAGGAACGACGTGAACTTGCATAAAGATACTTTGCGCCTGGAGATTGACGAGCTCAACCCTGATCACCACTTGGTTTCTTTCGTTTTTGATGCCCTCTTTGATGGCAGATTTACTATCTACTACTTAGCCAAAGAAGAAGAAAAGTGTAGGTTTATTCCACTATATCCCGATGCATTTGCGCCGATCTCATTCCCCTTTCAAAAGGGAGTTGGCCAGAAATTTTGTCAGCCTCCTGGAACGGGCATTGACCTTGGTTTCTTTGAGTTAGAGGATCTTGCAAAGCCCTCACCTGAAGAGGATCTGTTTCCCCTTGTAATATGTGCTGAAACAAGTATGAGAACTTCAGAAGATGAAACTTCTGATGGTTCCACAATTGATGCATCTCCTCACATGCAAATAACTCAAGCTGTCTTAGTGAAAAGCAACGGTATTGGTCCTTTCGAGGTAAAAGTAATTAGGCAGATTCTCTGGATTGATGGAGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGTGGCTCAACAGCTGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGCAGCGAGTGTGCAAAAGCATTACGGCTTCAATCCAATAAGTGCCCAATATGCCGCCAACCTATTGAGGAGCTCATGGAAATCAAGATAAACAATGATGACAAATGA 1029 0.4713 MGISWSNTNSNSNRRRRNNYPPPFPPPYYYSSDAHPPQLPPPPPPSQPPPPQGYYFPPTNPSTTPYGAPAWAPVRPPVAAAAAAAPPPYVDHQTTKKIRNDVNLHKDTLRLEIDELNPDHHLVSFVFDALFDGRFTIYYLAKEEEKCRFIPLYPDAFAPISFPFQKGVGQKFCQPPGTGIDLGFFELEDLAKPSPEEDLFPLVICAETSMRTSEDETSDGSTIDASPHMQITQAVLVKSNGIGPFEVKVIRQILWIDGVRYELRELYGIGSGSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELMEIKINNDDK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3617 342 MobiDBLite consensus disorder prediction 19 59 - -
Amo01g3617 342 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 341 - -
Amo01g3617 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 336 IPR013083 -
Amo01g3617 342 ProSiteProfiles Zinc finger RING-type profile. 287 326 IPR001841 -
Amo01g3617 342 MobiDBLite consensus disorder prediction 1 59 - -
Amo01g3617 342 Pfam Zinc finger, C3HC4 type (RING finger) 285 331 - -
Amo01g3617 342 SMART ring_2 287 325 IPR001841 -
Amo01g3617 342 PANTHER MAHOGUNIN 1 341 IPR045194 GO:0061630
Amo01g3617 342 MobiDBLite consensus disorder prediction 1 18 - -
Amo01g3617 342 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 286 326 IPR045195 -
Amo01g3617 342 SUPERFAMILY RING/U-box 286 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3617 Amo-Chr1 109070273 109072860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3617 47 342 C3H Transcription Factor Family AT3G06140 58.108 3.68e-115 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3617 - - adu:107465273 559.681