Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3582 ATGGTTAGGGTTAGTGTTTTGAACGATGCTCTGAAGAGCATGTACAATGCTGAGAAAAGAGGGAAGCGCCAAGTCATGATTAGGCCATCCTCCAAAGTCATTATCAAGTTCCTTCTTGTCATGCAGAAGCACGGTTACATTGGAGAATTTGAGTATGTTGATGACCATAGGGCTGGCAAAATCGTCGTCGAATTGAACGGCAGGCTTAACAAGTGTGGTGTAATCAGTCCCCGATTCGATGTCGGCGTTAAAGAGATCGAAAGTTGGACTGCTAGACTCCTACCCTCAAGACAGTTTGGATATATTGTGTTGACTACATCTGCCGGCATCATGGATCACGAAGAGGCCAGGAGAAAGAATGCTGGTGGTAAAGTTCTTGGGTTTTTCTACTAG 393 0.4504 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNAGGKVLGFFY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3582 130 PANTHER OS02G0478600 PROTEIN 1 130 - -
Amo01g3582 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo01g3582 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
Amo01g3582 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo01g3582 130 Gene3D - 1 69 - -
Amo01g3582 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo01g3582 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo01g3582 130 Gene3D - 70 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3582 Amo-Chr1 108599285 108600642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3582 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.154 2.42e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3582 K02957 - cit:102625104 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3582 01 108599285 108600642 Amo14g0508 14 7060221 7062272 PCT
Amo14g0508 14 7060221 7062272 Amo01g3582 01 108599285 108600642 PCT