Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3581 ATGATGCATGATCATAGAAAAAAGTCCTCTGTAGATGTAGATTTCTTTACAGAGTATGGTGAAGGGAGTAGATACAAAATAGAGGAAGTAATTGGCAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCAATAAAGAAGATAAATGATATATTTGAACATGTCTCTGATGCTACTCGCATTCTTCGGGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATTAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAGGATATATATGTTGTTTTTGAACTAATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCGAGAACATTACCAGTTTTTTCTTTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTAAAGCCGAAAAACATTTTAGCAAATGCCGACTGCAAATTGAAGATTTGTGACTTTGGTCTTGCTAGAGTGGCTTTCAACGATACACCAACTGCTATATTCTGGACTGATTATGTTGCTACAAGGTGGTATAGAGCTCCTGAGTTGTGCGGATCCTTTTTCTCCAAGTATACACCAGCAATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTATTAACTGGAAAACCTCTTTTCCCTGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTCGGAACACCATCTCATGAAGCCATAGCTAGGGTAAGGAACGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAGGAAGAAGCCAGTTCCTTTCTCCCAGAAGTTTCCTAATGCAGACCCCCTTGCCCTTCGTTTGTTAGAAAGAATGCTGGCATTTGAGCCTAAGGATCGACCTACTGCTGATGAGGCTCTAGCTGATCCATATTTCAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCTCAGCCAGTTACCAAGATGGAATTTGAATTTGAGAGACGCAGGATAACAAAGGAAGATGTACGAGAACTCATATACCGAGAGGCTTTGGAGTACCATCCAAAAATGTTAAAGGAACATCTAGAGGGAGCAGAGCCAACAGGTTTCATGTATCCGAGTGCTGTTGACCACTTCAAGAAGCAATTTGCATATCTCGAGGAGCATTACGGAAAAGGTGGAACTGTTACTCCACCTGAAAGGCAACATGCATCATTACCCAGGCCATGTGTACTATATTCAGATAAGTCGAAACCGAATGTATGTGAGGTTGCAGAAGATCTCTCCAAGTGTAGCATCAAAGAAAGTGAGAAGCCAGCCATAGATAGGAATGGTGTTATCCCGTTGACCAAGCCTCCTTTACATGCTCCTCAAAATATTCAAGGCATAGCTGCCCGGTCTGGGAGAGTTGCTGGTTCGGCGTTGAATTACAACAACTGTGGGGTAGCAGTGACAGCAGAGGCTGCTCAGCGGAGGATGGTTAGAAATCCACCTGTATCGACACAATATGCTGCTTCTAGCTGTTCATATCCTAGAAGAAACCCGAGCTGTAAAACCGAAAGACCAGAAGACAATGGTATTGAAGGTTCTAACGGACTTCAACCGAAGCCTCAATACATGGCACGAAAAGTTGCAGCCGCTCAAGGTGGAGCTGGTGGTCATTGGTAG 1686 0.4282 MMHDHRKKSSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSHEAIARVRNEKARRYLSSMRRKKPVPFSQKFPNADPLALRLLERMLAFEPKDRPTADEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREALEYHPKMLKEHLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRPCVLYSDKSKPNVCEVAEDLSKCSIKESEKPAIDRNGVIPLTKPPLHAPQNIQGIAARSGRVAGSALNYNNCGVAVTAEAAQRRMVRNPPVSTQYAASSCSYPRRNPSCKTERPEDNGIEGSNGLQPKPQYMARKVAAAQGGAGGHW* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3581 561 MobiDBLite consensus disorder prediction 508 543 - -
Amo01g3581 561 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Amo01g3581 561 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Amo01g3581 561 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3581 561 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Amo01g3581 561 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Amo01g3581 561 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3581 561 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3581 561 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Amo01g3581 561 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Amo01g3581 561 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Amo01g3581 561 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3581 Amo-Chr1 108587415 108591934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3581 1 561 MAP Kinase Gene Family AT5G19010 78.883 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Amo01g3581 Pkinase 9.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3581 - K04371 gmx:100814013 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3581 01 108587415 108591934 Amo11g2836 11 139219071 139223590 hybridization
Amo01g3581 01 108587415 108591934 Amo14g0506 14 7032247 7037715 PCT
Amo14g0506 14 7032247 7037715 Amo01g3581 01 108587415 108591934 PCT