Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3558 ATGCCAAAATTACCTTTGATAGTAGTTGTAGGATGGTGGAGATGTGGTGGTGACAGGAGAGAGAAGAGAGATAGTGAGTTTGTAGAAGATGTGCAACGATTCTTGAATGCCCGAAATATGGATATAGAATTTGATTGGCTACCTACATTGGGCAAAACTTTTAACATTGTCGGAGAAGCATGGCAATTTTGGATTGATTATGGTGGGAGGATGGAATTTGGTGTTCGCAAGCAATATTCTAACAAAAATGCAGATGGAAAAATTCTAAGTCTTAGGTTCATCTGTGTCGAAGAAGGTGTTCGTAAATCAGACAAAAGGGATTCTTTGACGGTCATTCTTAGACTTGAAACAAGGACTAATTGTGATGTAAAATTAGGAATCAGATATATTAAAGGCATTGAAAAATATGAGATTCATGATTTTTCAACAACTCACATGTTAGCATGTCAACAAAAAATATCTCAGGTTCAAGCTCAAGAAATTGAAATGGCAGATGACTCAGGAATCACAGAGCGGGCTTCATTTGAATTGATGAGTAGACAAGTTGGTGGAAGAGAAAATATTGGTTATACACGTTTAGACCAAAAAAATATCTTCGTACCAAAAGAATGA 612 0.3627 MPKLPLIVVVGWWRCGGDRREKRDSEFVEDVQRFLNARNMDIEFDWLPTLGKTFNIVGEAWQFWIDYGGRMEFGVRKQYSNKNADGKILSLRFICVEEGVRKSDKRDSLTVILRLETRTNCDVKLGIRYIKGIEKYEIHDFSTTHMLACQQKISQVQAQEIEMADDSGITERASFELMSRQVGGRENIGYTRLDQKNIFVPKE* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3558 203 Pfam FAR1 DNA-binding domain 62 145 IPR004330 -
Amo01g3558 203 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 180 - -
Amo01g3558 203 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 27 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3558 Amo-Chr1 108334697 108337180 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g3558 FAR1 5.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3558 - - ahf:112709060 287.73