Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3528 ATGGCATACGAGGAAGTAATAACGAGTGTGATGAGCTCCGATCACGCATCAGTGGGTCTGTGTACAGGAGTGTTCATATTGCTAAACACGGGAGGAAGAAGCTCTCACATTTTCGTTTTCAGCGAAGATCTTTTCTTTATTTACCTTCTCCCACCTATCATTTTCAATGCCGGGTTTCGAGTGAAGAAGAAACAATTCTTTCGCAATTTTATGACTATAATTCTCTTCGGAGTCGTTGGAACTTTGATATCATTCGCCGTCATATCACTGGGTGCTATACACTTATTCCAGAAATTGGATCTTGGTTCACTCAAGATTGGAGATTATCTAGCAATTGGAGCAATTTTTTCAGCAACAGATTCTGTTTGCACTTTGCAGGTGCTTAATCAGGACGAGACACCATTACTATACAGCCTAGTGTTTGGGGAAGGGGTAGTAAATGATGCTACTTCTGTGGTGCTCCTCAAAGCAATTCAGAATTTTGACCTTTCCCACATTGACTTTGCCACCGCTTCAGAATTATTAGCCAACTTTTTATACTTATTCATCGCAAGCACTGTGCTGGGAATTTTAGTTGGATTGCTTAGTGCATACATTATTAAAAATCTTTATTTTGGCAAGTTGATCAGGCATTGTACCAATCGTGAGGTTGCTCTTATGATACTGATGGCTTACCTTTCATACATGCTTGCTGAGCTATTTGCTTTGAGTGCTATTCTGACCATGTTCTTCTGCGGCATAGTTATGTCTCACTACACATGGCACAATGTTACCGAAAGTTCAAGAGTCACAACCAAGCATGCTTTTGCAACATTGTCATTCATTGCTGAGATATTTATATTCCTTTATGTTGGGATGGATGCACTGGACATAGAGAAGTGGCGATTTGTAAGCCAAAGTCCTGGAAAATCAGTTGGGATCAGTTCAGTGCTTCTAGGACTTATCCTAGTTGGAAGAGCAGCATTTGTTTTTCCTCTCTCATTCTTATCCAATTTGCTCCAGAAATCCCCACATGTGAAAATTGACATGAAGCAACAAGTATGTAGCCTTCCTTGGTACATGACTCCTGTCTCCTATGATCTTGTTTCACAGGTCACAATCTGGTGGTCTGGTCTCATGCGAGGTGCTGTTTCTATAGCACTTGCTTACAACCAGTTTACAGGGCTAGGCCACTCTGAGTCGCGTGAGAATGCCATCATGATCACTAGTACCATTTCTGTTGTTCTCTTCAGCACAGTGGTGTTTGGGATGATGACAAAGCCACTTGTGAGGTTACTGCTTCCTTCTTCCAAACATATAATCAGCATACCGTCCCCACCATCGACCCCAAAGACACTGACAGAGCCCCTATTGAGCAATGGACACCATGACTCGGGGCCCAACAATGGTGACAGTGTAAATGGGCCTAGCCCAAACCGATTGCGTATGCTTCTGAACATGACTAATCGTGGAGTACACCATTATTGGCGCAAGTTTGATGACTCTGTTATGCGTCCTGTCTTTGGTGGGAGGGGTTTTGTACCTTACGTTCCAGGTTCACCCCTTGAACCGGGTCTTCCGCAGTGGCGTTCAATTACTTCACCTACAGCTGAAGAAAACTTATGA 1605 0.4305 MAYEEVITSVMSSDHASVGLCTGVFILLNTGGRSSHIFVFSEDLFFIYLLPPIIFNAGFRVKKKQFFRNFMTIILFGVVGTLISFAVISLGAIHLFQKLDLGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLLKAIQNFDLSHIDFATASELLANFLYLFIASTVLGILVGLLSAYIIKNLYFGKLIRHCTNREVALMILMAYLSYMLAELFALSAILTMFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFIFLYVGMDALDIEKWRFVSQSPGKSVGISSVLLGLILVGRAAFVFPLSFLSNLLQKSPHVKIDMKQQVCSLPWYMTPVSYDLVSQVTIWWSGLMRGAVSIALAYNQFTGLGHSESRENAIMITSTISVVLFSTVVFGMMTKPLVRLLLPSSKHIISIPSPPSTPKTLTEPLLSNGHHDSGPNNGDSVNGPSPNRLRMLLNMTNRGVHHYWRKFDDSVMRPVFGGRGFVPYVPGSPLEPGLPQWRSITSPTAEENL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3528 534 PANTHER SODIUM/HYDROGEN EXCHANGER 3 17 522 - -
Amo01g3528 534 Gene3D - 105 156 - -
Amo01g3528 534 PRINTS Na+/H+ exchanger signature 73 81 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g3528 534 PRINTS Na+/H+ exchanger signature 113 123 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g3528 534 PRINTS Na+/H+ exchanger signature 58 72 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g3528 534 PRINTS Na+/H+ exchanger signature 44 55 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g3528 534 PANTHER SODIUM/HYDROGEN EXCHANGER 17 522 IPR018422 GO:0006812|GO:0015299|GO:0016021
Amo01g3528 534 MobiDBLite consensus disorder prediction 437 473 - -
Amo01g3528 534 Pfam Sodium/hydrogen exchanger family 41 424 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3528 Amo-Chr1 107896899 107900055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3528 18 516 Antiporters AT3G05030 67.928 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3528 - - ccaj:109808409 758.444