Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3520 ATGAAAGGTGATAGCGAGTGTGGTGGTTCTTCAATGCCGGCGGAGCGTAACAGAAGGCTGAAGATGAATCGCCTCTTCACTCAGCTTCAGGCCACCATCCCACGCCCCCTTTCCAAGGCTACAAAGGAAGTCGTTATAACGGAAACGATTAGGTACATAAAGGAGCTTGAGAGGAAGAAGAACAACTTGGAGCAGATCAAGGAACTACAAATTCAAAGCCATGCCAGTGGTACCACCTTCATGCTTCCATGCATGGCCAATGATGATAATTGCTCTGTCACTGTCACTGTCTCCGCCAACGTCGCGTTTTTCGGCATTCAGACCGTGGCTCGCCGAGGTTTGATTACCATGATTTTGGAGGTGTTCAGCAACCACAAGGCTGAGATTTTGGCTGCAAATGTGGCGGTTAATGAAGGGATTTTGACATTTGCAGTCACTGCTCTATTGCAAATTGTTGCTGATGGGGAAGGAGAAGGAGAAGGAGAAGGGGCTGTTGAGATGATTAAGAGAGAGATCATGACTTTGTAG 528 0.4773 MKGDSECGGSSMPAERNRRLKMNRLFTQLQATIPRPLSKATKEVVITETIRYIKELERKKNNLEQIKELQIQSHASGTTFMLPCMANDDNCSVTVTVSANVAFFGIQTVARRGLITMILEVFSNHKAEILAANVAVNEGILTFAVTALLQIVADGEGEGEGEGAVEMIKREIMTL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3520 175 CDD bHLH_SF 15 58 - -
Amo01g3520 175 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 173 - -
Amo01g3520 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 78 IPR036638 GO:0046983
Amo01g3520 175 Coils Coil 46 73 - -
Amo01g3520 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Amo01g3520 175 Gene3D - 10 79 IPR036638 GO:0046983
Amo01g3520 175 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 173 - -
Amo01g3520 175 SMART finulus 12 62 IPR011598 GO:0046983
Amo01g3520 175 Pfam Helix-loop-helix DNA-binding domain 14 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3520 Amo-Chr1 107827778 107828394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3520 15 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 24.201 1.52e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g3520 HLH 8.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3520 - - ahf:112704712 326.25