Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3518 ATGGAAGGCTCTGCAAACAATGAACGTCTTGATTTTGGGAGGATGGGCTATGGGTGCAAGCATTATAGGAGGAGATGCAAGATTCGTGCACCTTGCTGCAATGAGATCTACCCCTGCCGCCATTGCCATAACGAGGCTGCGAGCTTGTTGAGGAACCCCTATGATCGCCACGAACTTGTTCGCCAAGATGTTAAACAAGTTGTTTGTGCAGTTTGTGACACTGAGCAGCCGGTCGCTCAAGTTTGCACAAACTGTGGAGTTAGAATGGGAGAGTATTTCTGTGACATCTGCAAATTCTTCGATGATGATATAGGGAAACAACAGTTTCATTGTGATGATTGTGGAATCTGTAGGGTTGGTGGTCAAGAGAATTTTTTCCACTGCGAGAAGTGTGGGTCATGCTATTCAGTTACACTGCGTGACAATCATTTGTGTGTGGAGAACTCCATGAGGCACCACTGCCCCATTTGTTACGAGTTCCTTTTTGATTCAATGAAAGACATCAGTGTCATGAAATGTGGTCACACCATGCACCATGAATGCTTTGAAGAGATGCTAAATCGCGACACGTACTGCTGTCCCATATGCTCCAAGTCAGTGATGGACATGACCAGGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCCGAAGATTATCGGCATAGGAAGGTTTGGATATTATGCAATGACTGCAATGACACAACAGAAGTGTTCTTCCACATTCTGGGGCAAAAATGTGGTCACTGCCAATCGTATAATACGCGTGCAATCGCTCCTCCGGTTCTTCCTCAATGA 807 0.4548 MEGSANNERLDFGRMGYGCKHYRRRCKIRAPCCNEIYPCRHCHNEAASLLRNPYDRHELVRQDVKQVVCAVCDTEQPVAQVCTNCGVRMGEYFCDICKFFDDDIGKQQFHCDDCGICRVGGQENFFHCEKCGSCYSVTLRDNHLCVENSMRHHCPICYEFLFDSMKDISVMKCGHTMHHECFEEMLNRDTYCCPICSKSVMDMTRTWKRIDEEIEATVMPEDYRHRKVWILCNDCNDTTEVFFHILGQKCGHCQSYNTRAIAPPVLPQ* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3518 268 SUPERFAMILY RING/U-box 153 202 - -
Amo01g3518 268 Gene3D - 228 263 - -
Amo01g3518 268 SMART ring_2 154 196 IPR001841 -
Amo01g3518 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 268 - -
Amo01g3518 268 SUPERFAMILY CHY zinc finger-like 17 88 IPR037274 GO:0008270
Amo01g3518 268 Pfam Zinc-ribbon 201 259 IPR039512 -
Amo01g3518 268 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Amo01g3518 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 227 IPR013083 -
Amo01g3518 268 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Amo01g3518 268 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Amo01g3518 268 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Amo01g3518 268 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Amo01g3518 268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 268 - -
Amo01g3518 268 Pfam Ring finger domain 153 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3518 Amo-Chr1 107819944 107823238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3518 17 267 C2H2 Transcription Factor Family AT3G18290 41.016 4.15e-56 192