Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3512 ATGGGGAGGCCCTCCAAATCTCAGCCTTCTTCAGACGACGAAGCGCCGTCGAATGCCTCTGACTCCGATTCCGATTCCGGTTCGGAGGAGCAACTTCCCAACGATCAGATCAACGAACAAGAAGATGACGAGGAGCTCGAAGAGGTGGCTCGCTCCGCTAGCTCTGGCGATGACGATACTGCGCCGGATGAACCTGCCGGAGACGCCGACGACGATGAACAGGAGGAAAATAATGCTGACACTGAAGTTAGCAAGCGCGAGAAGGCGAGGTTGAAAGAAATGCAGAAATTGAAGAAGCAGAAGATTCAGGAGATTCTGGATGAACAAAATGCAGCTATTGATGCTGATATGAACAATAAAGGAAAGGGCCGATTGAAGTATCTGTTGCAGCAAACTGAGATTTTTGCTCATTTTGCCAAAGGTGCTCAATCTTCTTCTCAGAAGAAGTCAAAGGGAAGGGGACGCCATGCATCGAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTTAAAGAAGAAGAAGATGGTTTGGCAAGCACGCGGCTGGTAACACAACCATCATGTATCCAAGGGAAGATGAGGGATTATCAACTTGCTGGGTTAAACTGGCTCATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAAATGGGACTTGGGAAAACATTACAAACTATATCTTTGCTAGGGTATTTATATGAGTTCAGAGGTATAAAGGGTCCTCATATGGTTGTGGCCCCAAAGTCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTTTACGAGCAGTAAAGTTCCTTGGCAACCCGGATGAAAGGAGGCATATAAGAGAGGAGTTATTGGTTGCCGGGAAGTTTGATGTATGTGTTACAAGTTTTGAAATGGTTATCAAGGAGAAGTCTGCATTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAGGCCCACAGAATCAAGAATGAGAACTCCCTCCTTTCCAAGACGATGAGGCTCTATAATACAAACTACCGACTCCTTATAACTGGCACACCACTCCAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTGAAAATGATCAGCAGGAAGTTGTTCAACAATTACACAAGGTCCTTCGCCCATTTCTCCTTCGGAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACTATACTCAAAGTAGGCATGTCACAAATGCAGAAGCAGTACTATAGGGCATTACTACAGAAAGATCTAGAGGTTGTCAATGCTGGTGGAGAACGAAAGCGACTCCTCAACATAGCAATGCAACTGCGTAAATGCTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACTACAGGAGACCATCTCGTCACAAATGCTGGTAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGACTCCCGGGTCCTGATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTGATGTTTCGGGGATATCAATATTGTCGTATAGATGGAAACACCGGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTAATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGACAGAAGAAAGAAGTACAAGTTTTCCGATTTTGCACGGAGTATACAATTGAAGAGAAAGTAATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGCCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCCAAAGGAGAGGAAGCTACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACAATGCTGAGCTTTATGATTTTGATGATGACAAGGATGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAACTGGATTGAGCCACCGAGAAGAGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACATTGCGCCAAGGAGGTCCTACTAAACCGAAGGAGCCCCGTATTCCCAGGATGCCTCAACTGCATGATTTCCAGTTTTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACGCATCAGAAGAATCAAGTAAAAGACTCCATAGAGGTGGATGAACCAGAAGAGGTGGGAGATCCACTGACTGCTGAAGAGTTGGAAGAAAAGGAGCAGCTGCTAGAGGAGGGTTTCTCATCATGGAGCAGGAGGGATTTTAATACTTTCGTTAGGGCCTGTGAAAAATATGGCCGAAATGATATTAAAGGTATTGCTTCTGAGATGGAAGGAAAAACAGAAGAGGAAGTTGAGAGATATGCGGTGGTCTTCAAAGAAAGATACAAGGAATTAAACGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAAGCTAGAATATCCCGGAAAGATGAGATTATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGTTAGAACTAAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGATGAACTGAAGGCAGCATTTCGAATGTCACCTTTGTTTCGTTTTGATTGGTTTGTTAAGTCTCGCACAACGCAAGAACTAACAAGGAGGTGTGACACCCTCATTCGCCTTGTTGAGAAGGAAAACCAAGAATATGACGAAAGAGAGAGACAGGCTCGTAAGGAGAAGAAACTTGCAAAGAGTAGTACCCCATCAAAGCGTACCATGCCACGACAGACGGAGTCTCCATCTTCGAAGAAGCGCAAGCAGCTGACCATGGATAACTTTGTAAGCTCGGGGAAGAAGAAAAAATAA 3204 0.4279 MGRPSKSQPSSDDEAPSNASDSDSDSGSEEQLPNDQINEQEDDEELEEVARSASSGDDDTAPDEPAGDADDDEQEENNADTEVSKREKARLKEMQKLKKQKIQEILDEQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGAQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDDKDENKFDFKKIVSENWIEPPRRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIEVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRRDFNTFVRACEKYGRNDIKGIASEMEGKTEEEVERYAVVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSSTPSKRTMPRQTESPSSKKRKQLTMDNFVSSGKKKK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3512 1067 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Amo01g3512 1067 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 17 1067 - -
Amo01g3512 1067 Gene3D iswi atpase 899 931 - -
Amo01g3512 1067 Coils Coil 84 111 - -
Amo01g3512 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 756 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Amo01g3512 1067 Gene3D - 932 1035 - -
Amo01g3512 1067 PANTHER SNF2/RAD54 HELICASE FAMILY 17 1067 - -
Amo01g3512 1067 SUPERFAMILY Homeodomain-like 847 897 IPR009057 -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 1014 1067 - -
Amo01g3512 1067 Gene3D - 844 898 - -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 1 96 - -
Amo01g3512 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 649 IPR001650 -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 140 175 - -
Amo01g3512 1067 SMART helicmild6 524 608 IPR001650 -
Amo01g3512 1067 Pfam Helicase conserved C-terminal domain 496 608 IPR001650 -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 752 777 - -
Amo01g3512 1067 Gene3D - 414 706 IPR027417 -
Amo01g3512 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 691 IPR027417 -
Amo01g3512 1067 Pfam SLIDE 901 1011 IPR015195 GO:0003677|GO:0005634|GO:0006338
Amo01g3512 1067 SMART sant 844 893 IPR001005 -
Amo01g3512 1067 SMART sant 946 1007 IPR001005 -
Amo01g3512 1067 SMART ultradead3 189 381 IPR014001 -
Amo01g3512 1067 Gene3D - 194 409 IPR038718 -
Amo01g3512 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Amo01g3512 1067 SUPERFAMILY Homeodomain-like 899 1021 IPR009057 -
Amo01g3512 1067 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Amo01g3512 1067 Gene3D ISWI, HAND domain 745 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Amo01g3512 1067 MobiDBLite consensus disorder prediction 61 78 - -
Amo01g3512 1067 Pfam HAND 757 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Amo01g3512 1067 CDD SF2_C_SNF 494 619 - -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 1014 1032 - -
Amo01g3512 1067 ProSiteProfiles SANT domain profile. 843 895 IPR017884 -
Amo01g3512 1067 Coils Coil 994 1028 - -
Amo01g3512 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 408 IPR027417 -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 79 96 - -
Amo01g3512 1067 CDD SANT 847 891 IPR001005 -
Amo01g3512 1067 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3512 Amo-Chr1 107771320 107779101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3512 214 635 RAD5 or RAD16-like Gene Family AT1G02670 27.129 6.92e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo01g3512 SNF2_N 1.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3512 K11654 - gmx:100791510 1891.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3512 01 107771320 107779101 Amo14g0389 14 5746631 5767076 PCT
Amo14g0389 14 5746631 5767076 Amo01g3512 01 107771320 107779101 PCT