Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3508 ATGCGGGGATCTTGTCTCAAAAACCTGTTCTTGTACCACCTTACTGTCATCACAAGAACCCCATCAACCTCATTTCTGATCCCTTCACCTTCTTCCCCATTCCCTGCTCCCAATTACGCTACAGTCACAAAAACCCTGGAAAAACAATCCTTTACGTACGTCCTTTTAAAGAGTCCCGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAGATTCACAATGTCATTCGGAGATCCCCCAAGGTTCTCGCCAGCAAACCCACAGAGACCATCTTGCCCAAGCTCGAGTTCCTCATCTCCAAAGGTGCTTCAAAATCGCAACTTGCCTGCCTCATCGAGCGCAACCCTCTAATCTTGAAAAGAAGCTTAGAGAAACACCTGATCCCCACTTTCGATTTTTTGAACAATTTCATTCGTTCTGAACAAAGGACCGTTGCTTCTATCTTACGCGCTGTCCAAATTTTAACTTGTTCCAGGACGCTTCCAAATATTAACTTGTTGGTTGATTTAGGAGTCCGTGAGATAAGCATGTCATGGCTGATTCGCCAGTGGCCTTGCTTGCTTGTATTCAATTCTGAAGTTCGCCTTAAGAGTATTGTAGATGAAGTCATTAAAATGGGGGTTGATCCCAACAAGTCTAATTTTGTTGCTGCATTGTATGCTAAGTTTCTTCCAAAGTCCATGTGGGATAAGAAAGTTGAGTTGTACAAGAGTTTTGGATTAACTGATGACAACATTCGTGAGGCTTTTGTGAAGCACCCTTTCTGTATGCTCAAATCTGTGCAGAAAATTGAGGCCTGCATTGGATTCTTTGTCAAAGAACTCGGTTGGGAGCCTGCTGAAGTAACCAATAATCCGGTTCTTCTCTCGCTGGATTTGGACAAAAGGATTGTTCCGAGGGCTGCTGTCATGAAGATTCTTATCTCCAATGGTGTCATTAGGAGTGGCAGGCATGCTTCTGCATATTATGTTTCTGAAGAGGAGTTTTTTAAGAAGTATGTTAATCGTGACAAGGATCATGCTCCCGACTTATTGACGCTGTATCATGAGAAAATGAATCTTCCAGTAATGGATAGAGCAATAAACAATATCAGAACTTTTAAGGTGGCAACTGGAATTGGATTTTTAGTTAAATAA 1158 0.4257 MRGSCLKNLFLYHLTVITRTPSTSFLIPSPSSPFPAPNYATVTKTLEKQSFTYVLLKSPEKPDSVIALFRSFGFSDLQIHNVIRRSPKVLASKPTETILPKLEFLISKGASKSQLACLIERNPLILKRSLEKHLIPTFDFLNNFIRSEQRTVASILRAVQILTCSRTLPNINLLVDLGVREISMSWLIRQWPCLLVFNSEVRLKSIVDEVIKMGVDPNKSNFVAALYAKFLPKSMWDKKVELYKSFGLTDDNIREAFVKHPFCMLKSVQKIEACIGFFVKELGWEPAEVTNNPVLLSLDLDKRIVPRAAVMKILISNGVIRSGRHASAYYVSEEEFFKKYVNRDKDHAPDLLTLYHEKMNLPVMDRAINNIRTFKVATGIGFLVK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3508 385 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 52 362 - -
Amo01g3508 385 PANTHER CGI-12 PROTEIN-RELATED 52 362 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 Gene3D Transcription termination factor 3, mitochondrial 39 166 IPR038538 -
Amo01g3508 385 Gene3D Transcription termination factor 3, mitochondrial 167 347 IPR038538 -
Amo01g3508 385 SMART mt_12 80 111 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 SMART mt_12 116 147 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 SMART mt_12 254 285 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 SMART mt_12 286 320 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 SMART mt_12 152 180 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 SMART mt_12 185 216 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 Pfam mTERF 170 336 IPR003690 GO:0003690|GO:0006355
Amo01g3508 385 Pfam mTERF 67 181 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3508 Amo-Chr1 107744048 107745354 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g3508 mTERF 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3508 K15032 - csin:114308433 244.202