Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3507 ATGCGGGGATCTTGTCTCAAAAGCCTGTTCTTGTACCATCTCACTGTCATCACAAGAACCTCATCACCCTCATTTCTGATCCCTTCACCATCTTCCCCATTCCGTGCTCCCAATTACGCCACAGTCACAAAAACCCTGGAAAAACAATCCTTTACGGTGAATTACCTCGTGAAAAATTGTGGGTTCCTCCCAGATTCCGCTCTTCATGCTTCGAAAGACGTCCTTTTTAAGAGTCCCGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAGATTCACAATGTCATTCGGAGATCACCCAAGGTTCTCGCCAGCAAACCCAAAGAGACCATCTTGCCCAAGCTCGAGTTCCTCATCTCAAAAGGTGCTTCAAAATCGCAACTTGCCCGCCTCATCGAGCTCAACCCTCTAATCTTGACAAGAAGCTTAGAGAAACACCTGATCCCCACTTTCGATTTTTTGAACAATTTCATTCGTTCTGAACAAAGGACCGTTGCTTCTATCTTACGCGCTGGCCAAATTTTAACTTGTTCTAGGACGCTTCGAAATATTAACTTCTTGGTTGATTTAGGAGTCCGTGAGACAAGCATGTCATGGCTAATTCGCCAGTGGCCTTGGTTGATTCTATACACTTCTGAAGTTCGCCTTAACAGTATAATAGATGAAGTCATTAAAATGGGGGTTGATCCCAACAAGTCTAATTTTGTTGCTGCATTGTATGCTAAGTTTCTTCCAAAGTCCATGTGGGATAAGAAAGTTGAGTTGTACAAGAGTTTTGGATTAACTGATGACAACATTCGTGAGGCTTTTGTGAAGCACCCTTTCTGTATGCTAAAATCTGTGCAGAAAATTGAGGCCTGCATTGGACTCTTTGTCAAAGAACTCGGTTGGAAGCCTACTGAAGTAACCAATAATCCGGTTCTTCTCTCGCTGGATTTGGACAAAAGGGTTCTTCCGAGGGCTGCTGTCATGAAGATTCTTATCTCCAATGGTGTCATTAAGAGTGGCAGGCATGTTTCTGCATATTATGTTTCTGAAGGGGACTTCTTTAAGAAGTATGTTAATCGTGCTAAGGATCATGCTCCCGACTTATTGAAGCTGTATCATGAGAAAATGAATATTGCAGTAATGGATAGTAAATTGATGTCTTGA 1173 0.4297 MRGSCLKSLFLYHLTVITRTSSPSFLIPSPSSPFRAPNYATVTKTLEKQSFTVNYLVKNCGFLPDSALHASKDVLFKSPEKPDSVIALFRSFGFSDLQIHNVIRRSPKVLASKPKETILPKLEFLISKGASKSQLARLIELNPLILTRSLEKHLIPTFDFLNNFIRSEQRTVASILRAGQILTCSRTLRNINFLVDLGVRETSMSWLIRQWPWLILYTSEVRLNSIIDEVIKMGVDPNKSNFVAALYAKFLPKSMWDKKVELYKSFGLTDDNIREAFVKHPFCMLKSVQKIEACIGLFVKELGWKPTEVTNNPVLLSLDLDKRVLPRAAVMKILISNGVIKSGRHVSAYYVSEGDFFKKYVNRAKDHAPDLLKLYHEKMNIAVMDSKLMS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3507 390 PANTHER CGI-12 PROTEIN-RELATED 45 381 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 45 381 - -
Amo01g3507 390 Pfam mTERF 87 207 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 Pfam mTERF 189 341 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 Gene3D Transcription termination factor 3, mitochondrial 63 187 IPR038538 -
Amo01g3507 390 Gene3D Transcription termination factor 3, mitochondrial 188 367 IPR038538 -
Amo01g3507 390 SMART mt_12 205 236 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Amo01g3507 390 SMART mt_12 172 200 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3507 Amo-Chr1 107740092 107741323 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g3507 mTERF 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3507 K15032 - twl:120012851 268.085