Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3506 ATGGAACGGAATCGTTCCCTCCGGCGAAAGACACACAAAGAGAAGGAGGTGGTGGTCAATAAGGTAATTTGGGCAGCTATCGAGGGGCATTCTTGTCCAATATGTTTGACCGATCTGGAATCTCGGTTCAGAGAAGCTGCGGTTCTGTCCCCCTGCTACCACGCTTACTGCACCGACTGCATCCGCCGTTGGAGTCACGTGCGCAGAGCGTGCCCTCTCTGTAATTCCGGTTTCGCCTTCTGGTTCTCCATCCTCAGCCTCTCTTCCAGAACCTTCCGGAAGCACTTCTTACCCTTCCACTCTCATTCTGATGCAAACCAACCGCCACGACTTCCCTCTACCAGGGCGAGGGTAGCGGTGACTAATGGACAAAGGAGGGCATTGCCCCGGAGAAGATCGTTTGGACGTGCTGGACTTGTGAGTGCAGATGTTATTGCTCAGAGGAAGCTTCAATGGCGTGCTAGCATATACAATCAAAGGTTGCAACCTGATTATGCAACCCTAAGGTGTCTTGAGCGAGGATGCAAAGGCTGCGGTCCATGCAACTTGTTCCTTTCCATGGGGAATGGAACAAGAAATGCTATTAAAAGGGACATTCTACAACGGATTGAGCCATGGATAATGAGGGAGCTACAAGCTCTCTTAGGGGACCCAGATCCAACTGTCATTGTTCATGTTGCCACCTCACAGTTCATCACTTGGCTAGAAGAGAAGGCGAAATCGCCATCTCGCCACCTTCATGTGGGAGATACCTTCATTTCACCTCTTCGTCCATTCCTGCATGATAAAGCGACCATCTTTTGGCATGAGCTAAGTTGTTTCGCTGAGGGTTGTCACAACATGGATACCTACGATGAAGTCGTCGAATATAAACAACAGGAGTGGGTGGACGACACACATTAG 903 0.5017 MERNRSLRRKTHKEKEVVVNKVIWAAIEGHSCPICLTDLESRFREAAVLSPCYHAYCTDCIRRWSHVRRACPLCNSGFAFWFSILSLSSRTFRKHFLPFHSHSDANQPPRLPSTRARVAVTNGQRRALPRRRSFGRAGLVSADVIAQRKLQWRASIYNQRLQPDYATLRCLERGCKGCGPCNLFLSMGNGTRNAIKRDILQRIEPWIMRELQALLGDPDPTVIVHVATSQFITWLEEKAKSPSRHLHVGDTFISPLRPFLHDKATIFWHELSCFAEGCHNMDTYDEVVEYKQQEWVDDTH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3506 300 SMART ring_2 32 74 IPR001841 -
Amo01g3506 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 84 IPR013083 -
Amo01g3506 300 SUPERFAMILY RING/U-box 23 84 - -
Amo01g3506 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 25 297 - -
Amo01g3506 300 Pfam Ring finger domain 31 75 IPR001841 -
Amo01g3506 300 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Amo01g3506 300 ProSiteProfiles Zinc finger RING-type profile. 32 75 IPR001841 -
Amo01g3506 300 PANTHER TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED 25 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3506 Amo-Chr1 107711314 107712538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3506 19 272 C3H Transcription Factor Family AT2G39100 43.182 2.85e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3506 - - adu:107464375 634.409