Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3503 ATGCGGGGATGTTATAACAAAAACCTGTTCTTGTACCACCTCACTGTCATCACAAGAACCCCATCACCCTCCTTTCTGATCCCTTCATCCCCTTCCCCTGTCCGTGCTCCCAATTACAGCACACTCACAAAAACCCCGGAAATACAATCCTTTTCGGTGAATTACCTCGTCAACAAGTGCGGGTTCCTCCCAGATTCCGCTCTTCAGGCTTCAAAATACGTCCTTTTTAAGAGTCCCGAGAAACCCGACTCAGTCATCGCACTCTTCAGGAGCTTCGGTTTCTCAGATTTGCAGATTCACAATGTCATTCAGAAATCGCCCAGGGTTCTCCTCAGCAAGCCCAAAGAGACCATCTTGCCCAAGCTCCAGTTCCTCATCTCCAAAGGCGCTTCAAAATCACAACTTGCCCGCATCATCGAGCTCAACCCTGTAATCTTGCAAAGAAGCTTAAAGAAACACCTAATCCCCACTTTCGATTTGTTGAACAATTTCCTTCGTTCTGAAGAAAGGACCGTTGCTTCTATTTTACATTCTGTCCAAATTTTAACTTCTTCAACGTCGCATCGAAATCTTAATTTGCTGGTTGATTTAGGGGTCAGTGAGAGAAGCATGGCAAGGCTACTTCACCAATGGCCTTGGTTGCTTCGATTCAATTCTGCAGGCCTTAAGAGTATGGTAGATGAAGTCATTAAAATGGGGGTTGATCCCGCCAAGGCTAATTTTGTTCCTGCGTTGTATGCTAAGCTGCTTCCAAAGTCCATGTGGGATAGGAAAGTTGAGTTGTACAAGAGTTTTGGATTAACTGATGACAACATTCGTGAGGCTTTTGTGAAGCACCCTTTCTGTATGCTCAAATCTGTGCAGAAAATTGAGGCCTGCATTGAATTCTTTGTCAAAGAACTCGGTTGGAAGCCTGTTGATGTCACCAATTATCCGGTTCTTCTCTCGCTGAATTTGGAGAAAAGGCTTGTTCCCAGGGCTGCTGTCTTGAAGATTCTTATGGCCAATGGTGTCATTAAGAGTTGTCGGCATTTGTTAGCATATACTGTTTCGGAAGAGATGTTCTTTAAGAATTATGTGAATCGTGGTAAGGATCAAGCACCGGAGTTATTGAAGCTGTATCGGGAGAAAATGAATCTTCCAGTAATGGATAGTAAATTGATGTCTTGA 1170 0.4402 MRGCYNKNLFLYHLTVITRTPSPSFLIPSSPSPVRAPNYSTLTKTPEIQSFSVNYLVNKCGFLPDSALQASKYVLFKSPEKPDSVIALFRSFGFSDLQIHNVIQKSPRVLLSKPKETILPKLQFLISKGASKSQLARIIELNPVILQRSLKKHLIPTFDLLNNFLRSEERTVASILHSVQILTSSTSHRNLNLLVDLGVSERSMARLLHQWPWLLRFNSAGLKSMVDEVIKMGVDPAKANFVPALYAKLLPKSMWDRKVELYKSFGLTDDNIREAFVKHPFCMLKSVQKIEACIEFFVKELGWKPVDVTNYPVLLSLNLEKRLVPRAAVLKILMANGVIKSCRHLLAYTVSEEMFFKNYVNRGKDQAPELLKLYREKMNLPVMDSKLMS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3503 389 Gene3D Transcription termination factor 3, mitochondrial 189 367 IPR038538 -
Amo01g3503 389 Gene3D Transcription termination factor 3, mitochondrial 62 188 IPR038538 -
Amo01g3503 389 SMART mt_12 100 131 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 SMART mt_12 136 167 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 SMART mt_12 305 336 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 Pfam mTERF 188 349 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 Pfam mTERF 87 218 IPR003690 GO:0003690|GO:0006355
Amo01g3503 389 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 45 380 - -
Amo01g3503 389 PANTHER CGI-12 PROTEIN-RELATED 45 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3503 Amo-Chr1 107687629 107689442 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g3503 mTERF 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3503 K15032 - pvy:116121303 275.404