Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3501 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGGCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTTCTTCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTACCCTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGGAGAGAAAGAGTGTTCCTATTACGTGAAAACTGGGCAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCCGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACTCCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCCGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGGAATGTGGCCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGATCTCTCAGTTACAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCATATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAAGCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGTGCTGCATCTCACACCTCAAGCTAA 1461 0.5195 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGGTESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGSSCKYNHPRQAAGTPTLVSLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQASAQSSSSSATASSAATSSAASHTSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3501 486 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Amo01g3501 486 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Amo01g3501 486 MobiDBLite consensus disorder prediction 1 25 - -
Amo01g3501 486 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 471 - -
Amo01g3501 486 MobiDBLite consensus disorder prediction 404 486 - -
Amo01g3501 486 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Amo01g3501 486 PANTHER PROTEIN PHOSPHATASE RELATED 1 471 - -
Amo01g3501 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Amo01g3501 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Amo01g3501 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Amo01g3501 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Amo01g3501 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Amo01g3501 486 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Amo01g3501 486 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Amo01g3501 486 Gene3D - 89 172 - -
Amo01g3501 486 Gene3D - 303 388 - -
Amo01g3501 486 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Amo01g3501 486 MobiDBLite consensus disorder prediction 276 310 - -
Amo01g3501 486 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Amo01g3501 486 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Amo01g3501 486 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Amo01g3501 486 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Amo01g3501 486 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Amo01g3501 486 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Amo01g3501 486 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Amo01g3501 486 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Amo01g3501 486 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Amo01g3501 486 Gene3D - 41 84 - -
Amo01g3501 486 MobiDBLite consensus disorder prediction 276 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3501 Amo-Chr1 107656105 107660578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3501 1 453 C2H2 Transcription Factor Family AT5G18550 55.388 1.97e-153 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g3501 zf-CCCH 9.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3501 - - gmx:100789405 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3501 01 107656105 107660578 Amo11g2666 11 134852289 134856702 hybridization
Amo01g3501 01 107656105 107660578 Amo20g0076 20 997798 1004369 PCT
Amo20g0076 20 997798 1004369 Amo01g3501 01 107656105 107660578 PCT