Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3499 ATGGCCCCTTCCAAAAAATCCAAAAGTGTAAATAAGAGGTTTCCTAATGTTCGTGAAGCTGCTTCGAGTAAAGAGAAAAATGCAGAAAATGCTAGCAAGAATAAGCAGAAGGCAAGTCCTGGCGCTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGGCCACAATGGAGCAAGGAGGAACTTGAGCATTTCTATGAAGCTTACCGTAAATATGGAAAAGACTGGAAGAAGGTTTCTCTTGCAGTACGTAATAGATCCGTGGAAATGGTAGAAGCTTTGTACACAATGAACAGGGCATACTTATCTCTTCCAGAGGGCACTGCTTCTGTTGTTGGACTGATAGCAATGATGACGGATCATTATAGTGTACTGGGAGGAAGTGACAGTGAAAAGGAGAGCAATGAAGATGCAGAAGTATCTAAAAGGTCTCAAAAACGTTTGCGAAGAAAACAAATGAATGACCATAAAACATTAGAGGGACCCTTTTCAGATCATTCTCAATCACAATCTGTTGCATCAGGTGATGGTTGCTTGTTGCTGTTGAAGACTAGGAATTCTGGGCTTACTCCTCATGCTGTCAGAAAACGGACTCCTCGAGTACCTATTTCACATTCCATTGGTAAAGATAATGCAGAGAAGTTATTTTCATCTGCCAGACAGGGGCGCAAACAAATGGTTGATACTAATGATGTTACTCATAAGATTGCATTAGCATTGGCCGAGGCTTCACAAAGAGGTGGCTCCTCAAAAATTTCTGCGTCTCCAAACAAGAGAGCAGCGCCATCGCCTAGTAAGAAAAGTGGGAAGAAGGTTAAATCAGAAATAGCTGGATCCAAGTTTTGCAGTTCTGATTTGGATGGGGGTAGCTCTGAATTGAGTTTAGGAAGCACAGAAGGAGACAATGGAGATTATTCTAGAAAAACAGTTAATTGGATAAGTAGGGAAAATACTGGAAAAGGAAGGAATCGAGAAAAGAGAGTAAAACACACTGGGAACAATTTAGAACCTGAGGAAAATTTAAACATGCATTTGGATGAGATAAAGGAAGCCTCAAGTGGGACAGATGATGGTAAAAATCTGAATTTTATCAAATCGAATTTTAGCACTGATTTTGCAAATGCAAAGAATCCAAGTCCCTCTTCTTACAAGGGTTCAAAGAAGAGAAGTAAAAAACTACAGGTTGAGAAAGATGAAGCTTCGGCTTTTGATGCTCTGAAAACTTTGGCTGATCTGTCTTTGATGATGCCTGTTACGAATGCTGACAGTGAGTCATCAGCACAGGTCAGAGAAGGAAACCATGATGTTGAGGAGTCTAAAGTGAAAATGCATAAGGCAACTAAGATTGAAAGAACTGCTTCAAGTGCATTAGGCAAGATCTTCTCTGATGGAGCTGCTATTCCTGAAGGGGAGGGTGTGTACCAGCTTAATGCAGGAATCAGGAAAAGGAAACAGAAATCTTTTAGCCTAAACAATGATGAAACACATACTGATTCTCACCTCAGTGGCTCCCAGAAAACCAAGGATACTGATGAGGTCAAGAAATCAATGGTTAAAGGTAAGCGATCATCTGTTTCTACAACATATCCAAGACAACCAAAGTTAGTTAAATCCCCGGGAAAGATGTCTTCAAGTGGTAATGACAAAAGAGAAGGGGATGATTCAACTTCATCTCCCATAAAGGTTTCATCTGCTAACCAAGTCGGTCAAGTAAACAAAGGAAGGCCTAGAAGAAAAATGGGAAAACCAAAACCAATGGTAGAAGGAGATCCAGTGTTGTCTGGAAATATTTTCAGTAGTCAGCATAATAAATCCTGTGCTTCGGTCCAGAATAGTTCCTCTAGCCCCAAGGGAAAGCTTATTAACTGCCTGTCTTCACATCAAGCACGGAGATGGTGCACTTTTGAATGGTTTTATAGTGCCATCGATTACCCATGGTTTTCAAAGAGGGAGTTCGTGGAGTACTTGGACCATGTTGGACTGGGTCATGTTCCTAGATTGACTCGTATTGAGTGGGGAGTCATTAGAAGTTCCCTTGGCAAACCGCGGAGATTTTCAGAGCAATTTTTGATAGAAGAAAAACAGAAGCTTAATCAATACCGAGAATCTGTTAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGCCTTCCTACTGATTTGGCTCGGCCATTAATTGTTGGCCAGCGAGTTATTGCTATTCATCCGAAGACAAGAGAGATTCATAATGGAAGTATACTAACTGTTGACCATTGTCGGTGTCTGGTTCAGTTTGACCAGCGTGAACTCGGGGCTGAATTTGTTATGGATATAGATTGCATGCCTATGTATCCATTTGAAAATATGCCTACATCTATGGCAAGACACAACATTGCTCATTGTAGAATAAACGAGACCTTTAATGATCTCCGACTTAATGGAAAACTGAAACAAGAAATTATTGCTGATCACACAATATTGTCCCCTAGTGAGAATATAGATACTACTAAAGGTCTTCACATATTGCCCACTAAGCATGGAAGCAGTACTTTATCAAATCAGGGAGTTTCACCAAATTCCAAATCACAAGTGAAAGCTATGTGCAATCAGATTTGTAATGCTCAACAGGCACCAAGTTTGCAACCTTTGCCTTTTGAACATGTTCATTCAAAAGAAGCTGACATATCGGCTATTTCAGAGTTGACTCGCGCTCTTGACAAGAAGGAACTTGTGATGTCTGAACTGAAGGTCATGAACGATGGGGTTTCAGAAAGCCAGAAATATGGAGACAACTCATTGAAAGATTCAGAGCCTTTTAAGAGGAGTTATGCTTCACTGATAAAGCATTTAACTGAAGTAAATGAGCAGGTTTCTTCTGCTTTGTTTCGCCTGAGGCAACGCAACACATATCAAGGGAGCACCACAGAATTATCACTAAAGCCCATAGCTAATTATGATGACCCTGGTGGTCAAGCTAGCTCCTCCAATTGTTCAGCATGTCATAACCAAGAATCTATACCTCTTGGCCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAGCAATGGTTGTTCAAGCTACACAGGCAATGTCAATATTTATGAAGACAGATAGTAAGGTTGAAAAGATCGAGGATGCAATAAATTTTATCAATAATCAGCTTTCAGTGGATGACCCTGCTGCTCCAGCCACAAATTCTCTGCCTGCTGATTCAATTCACGTCACTCTGGCTTCTCAGGATCAATTGACAGGAAACACATTAAATCCCTCAGTAAATTGTCATGCACAAGATGCCGAATTTAACAGTTCATCTGACCAAAATGAAATGAAAATTCCTTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGCACGGAACGACAGTTTCCACCAGCTGATGTTGCTCAGGTACTAGATTCCGCTGTCACGAGTCTGCAGCCATTTTGCTCAAAGAACCTTCCAATATATGGGGAGATACAGAAATGCATGGGTATCATAAGAAACCAGATACTGGCACTCATACCAACTTAG 3537 0.4077 MAPSKKSKSVNKRFPNVREAASSKEKNAENASKNKQKASPGAQKKRKLADMLGPQWSKEELEHFYEAYRKYGKDWKKVSLAVRNRSVEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSEKESNEDAEVSKRSQKRLRRKQMNDHKTLEGPFSDHSQSQSVASGDGCLLLLKTRNSGLTPHAVRKRTPRVPISHSIGKDNAEKLFSSARQGRKQMVDTNDVTHKIALALAEASQRGGSSKISASPNKRAAPSPSKKSGKKVKSEIAGSKFCSSDLDGGSSELSLGSTEGDNGDYSRKTVNWISRENTGKGRNREKRVKHTGNNLEPEENLNMHLDEIKEASSGTDDGKNLNFIKSNFSTDFANAKNPSPSSYKGSKKRSKKLQVEKDEASAFDALKTLADLSLMMPVTNADSESSAQVREGNHDVEESKVKMHKATKIERTASSALGKIFSDGAAIPEGEGVYQLNAGIRKRKQKSFSLNNDETHTDSHLSGSQKTKDTDEVKKSMVKGKRSSVSTTYPRQPKLVKSPGKMSSSGNDKREGDDSTSSPIKVSSANQVGQVNKGRPRRKMGKPKPMVEGDPVLSGNIFSSQHNKSCASVQNSSSSPKGKLINCLSSHQARRWCTFEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGKPRRFSEQFLIEEKQKLNQYRESVRSHYAEVLAGTKEGLPTDLARPLIVGQRVIAIHPKTREIHNGSILTVDHCRCLVQFDQRELGAEFVMDIDCMPMYPFENMPTSMARHNIAHCRINETFNDLRLNGKLKQEIIADHTILSPSENIDTTKGLHILPTKHGSSTLSNQGVSPNSKSQVKAMCNQICNAQQAPSLQPLPFEHVHSKEADISAISELTRALDKKELVMSELKVMNDGVSESQKYGDNSLKDSEPFKRSYASLIKHLTEVNEQVSSALFRLRQRNTYQGSTTELSLKPIANYDDPGGQASSSNCSACHNQESIPLGHIAEIVESSRRKARAMVVQATQAMSIFMKTDSKVEKIEDAINFINNQLSVDDPAAPATNSLPADSIHVTLASQDQLTGNTLNPSVNCHAQDAEFNSSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALIPT* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3499 1178 MobiDBLite consensus disorder prediction 245 261 - -
Amo01g3499 1178 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Amo01g3499 1178 SMART sant 52 100 IPR001005 -
Amo01g3499 1178 Gene3D - 3 108 - -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 556 570 - -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 1 48 - -
Amo01g3499 1178 Pfam DIRP 636 737 IPR033471 -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 485 518 - -
Amo01g3499 1178 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Amo01g3499 1178 CDD SANT 56 90 IPR001005 -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 283 316 - -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 125 143 - -
Amo01g3499 1178 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 519 542 - -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 125 170 - -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 242 336 - -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 484 594 - -
Amo01g3499 1178 SMART DIRP_2 637 738 IPR033471 -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 317 336 - -
Amo01g3499 1178 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1178 IPR028306 -
Amo01g3499 1178 MobiDBLite consensus disorder prediction 18 32 - -
Amo01g3499 1178 PANTHER LIN-9 1 1178 IPR010561 GO:0006351|GO:0017053
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3499 Amo-Chr1 107630471 107641766 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g3499 DIRP 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3499 - - adu:107464346 2208.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3499 01 107630471 107641766 Amo11g2664 11 134826432 134837776 hybridization