Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3492 ATGTTTCACTCAAAGCATGACTCTCTTAGAAGAGCTCTTCTCTTCATCCTCAGCCACAACCCCCCTCTTCCATCGCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCACAAAAAAGCCGCCACTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACTGTCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCACTCTCCCAAACCACCACCATCATGTGCAAGATTCCTGTGGTACTCAAACGCGACCCCACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAAGAGTCCCAACTTCTTGCTTCGAAGCCTTAACCATATAGTATCCTTCTACGAATTGGTAAGGAGGTTCTCTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTCCTGATGTTCGTGTGCCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTGTAATTTCAGTGTGGTGTTGCTGGCCAAAAAGTCCGTAACTAAGTCCCAATGGGATGCTAAAGTTGATGTCCTTAAGAAATGGGGCTGGTCTGAACAAGATTTTTCGGAGGCCTTTAGGAGGCACCCTCATTTTATGCTATGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCATTTCGCATTAGACCGATGCTTTTTGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTAATGAAGAAGAATGCTAGCATAATCACACCGTTTTCTTTGACTGAGGAGCTGTTCCTCAAGAGGTGTATCACATGTTTTGAGGAGAAAGATAGACTTCAGTCAACTCTGATTAATTTCAAGGTGAGTGTTGTGAGTGTGTGCCCTGTGACTCCATATCAAGCTTTTGTTTCAAATCCACAGCTTGCCATCTTCATCTTCATGTCGACGAGTGAGCGGAAGATCATCGACCTGGAGCAGGGATGGGACTTCATGCAGAAGGGCATCACCAAGCTCAAGAATATTCTAGAAGGCTTGCCTGAACCTCACTTCAGCTCCGAGGACTACATCATGCTTTACACAACCATCTATACCATGTGCACCCAAAAGCCTCCTCATAACTATTCCCAACAACTCTATGACAAGTACAAGGAGGTATTTGAAGAGTACATCCAATCAACGGTATTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTAAAGAGGTGGGCAAACCATAAAATTATGGTTGGTTGGCTTTGTCGTTTCTTTCGCTATTTGGAAACCTCCATTGTTGCCCGGAGGTCACTCCCACCCCTTAATGAAGTTGGCTTAACTTGCTTCTATGATTGGGTTTACAAGGAGCTAAATGGGAAAGTTAGAGATGCAGTTATTTCTATTATTGATCAAGAACGTGAAGGAGAGCAGATTGATCGGACTTTATTAAAGAATGTATTAGACATATTTGTTGAAATTGGGATGGGGAAAATGGATCACTATGAGAATGATTTTGAATCTGCAATGCTTAAAGACACCTCTGCTTATTACTCTCAAAAGGCTTCTAATTGGATCCTAGAAGATTCTTGTCCTGATTACATGCTCAAGGTTGAGGAGTGCTTAAAACGTGAGAAAGATAGAGTTGCTCAATATTTGCACTCCAGTAGCGAGCCAAAGTTGTTAGAGAAAGTTCAACATGAGCTGCTATCCGTGTACGCAAACCAACTCCTCCAGAAAGAGCACTCTGGATGTCATGCTTTGCTTAGAGATGGCAAGGTTGAAGATCTGTCACGGATGTTCAGGCTATTTTCTAAAATACCTGAAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTATCACTGAAGGTATCGTATTGGTTAAGCAGGCTGGAAGATGCAGCTAG 2196 0.4372 MFHSKHDSLRRALLFILSHNPPLPSPSTKSYLLLLRPQKSRHSTTSTSDDHHSFTVSYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSLSQTTTIMCKIPVVLKRDPTKAILPKFQFLASKGASPSDIVLMTTKSPNFLLRSLNHIVSFYELVRRFSPSDLKAIAYLTGCPSSIPDVRVPQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQCNFSVVLLAKKSVTKSQWDAKVDVLKKWGWSEQDFSEAFRRHPHFMLCSEDKLNAVMSFWISNLGWDSSAFRIRPMLFGYSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEELFLKRCITCFEEKDRLQSTLINFKVSVVSVCPVTPYQAFVSNPQLAIFIFMSTSERKIIDLEQGWDFMQKGITKLKNILEGLPEPHFSSEDYIMLYTTIYTMCTQKPPHNYSQQLYDKYKEVFEEYIQSTVLPSLREKHDEFMLRELVKRWANHKIMVGWLCRFFRYLETSIVARRSLPPLNEVGLTCFYDWVYKELNGKVRDAVISIIDQEREGEQIDRTLLKNVLDIFVEIGMGKMDHYENDFESAMLKDTSAYYSQKASNWILEDSCPDYMLKVEECLKREKDRVAQYLHSSSEPKLLEKVQHELLSVYANQLLQKEHSGCHALLRDGKVEDLSRMFRLFSKIPEGLDPVSSIFKQHVITEGIVLVKQAGRCS* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3492 731 SUPERFAMILY Cullin repeat-like 416 727 IPR016159 -
Amo01g3492 731 PANTHER CULLIN 3B 407 728 - -
Amo01g3492 731 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Amo01g3492 731 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Amo01g3492 731 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Amo01g3492 731 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Amo01g3492 731 Pfam mTERF 253 357 IPR003690 GO:0003690|GO:0006355
Amo01g3492 731 Pfam mTERF 89 235 IPR003690 GO:0003690|GO:0006355
Amo01g3492 731 Gene3D Cullin Repeats 415 546 - -
Amo01g3492 731 Gene3D Cullin Repeats 669 730 - -
Amo01g3492 731 PANTHER CULLIN 407 728 IPR045093 -
Amo01g3492 731 Pfam Cullin family 430 726 IPR001373 GO:0006511|GO:0031625
Amo01g3492 731 Gene3D Cullin Repeats 548 668 - -
Amo01g3492 731 Gene3D Transcription termination factor 3, mitochondrial 183 368 IPR038538 -
Amo01g3492 731 Gene3D Transcription termination factor 3, mitochondrial 65 182 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3492 Amo-Chr1 107540679 107546070 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g3492 Cullin 3.8e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3492 K03347 - adu:107464281 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3492 01 107540679 107546070 Amo11g2656 11 134715027 134721649 hybridization
Amo01g3492 01 107540679 107546070 Amo04g0390 04 7669553 7674462 PCT
Amo04g0390 04 7669553 7674462 Amo01g3492 01 107540679 107546070 PCT