Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3490 ATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCTTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTCTTATTTCAGTGTGGTGTTGCTCACCAAAAGGGCCGTAACTAAGTCCCGATGGGATGCTAAAGTTCATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCAGAGGCCTATAGGAGGCACCCTCAGTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCAGCGTTTCGCATTAGACCGGTGCTTTTTGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTGAGAGCTAAGAAGTTATTGAGCGTAGATTCGCAGCTTGCCATCTTCATCTTCATGTCGACGAGTGAGCGGAAGATCATCCACCTGGAGCAGGGATGGGATTTCATTCAGCAGGGCATCACCAAGCTCAAGATAATTCTAGAAGAAGGCTTGCCTGAACCTTTCTTCAACTCCGAGGACAACCGGATGCTTTACGCGTAA 606 0.4637 MLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQSYFSVVLLTKRAVTKSRWDAKVHVLKKWGWSEQDFSEAYRRHPQFMLRSEDKLNAVMSFWISNLGWDSSAFRIRPVLFGYSLEKRLIPRAKVRAKKLLSVDSQLAIFIFMSTSERKIIHLEQGWDFIQQGITKLKIILEEGLPEPFFNSEDNRMLYA* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3490 201 PANTHER CGI-12 PROTEIN-RELATED 1 136 IPR003690 GO:0003690|GO:0006355
Amo01g3490 201 SMART mt_12 112 145 IPR003690 GO:0003690|GO:0006355
Amo01g3490 201 SMART mt_12 13 41 IPR003690 GO:0003690|GO:0006355
Amo01g3490 201 SMART mt_12 80 111 IPR003690 GO:0003690|GO:0006355
Amo01g3490 201 Pfam mTERF 3 143 IPR003690 GO:0003690|GO:0006355
Amo01g3490 201 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 136 - -
Amo01g3490 201 Gene3D Transcription termination factor 3, mitochondrial 1 162 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3490 Amo-Chr1 107533876 107535408 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g3490 mTERF 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3490 K15032 - aprc:113852255 150.214