Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3487 ATGTTTCACTCAAAGCATCACTCTCTTACAAGAGCTCTTCTCTTCTTCCTCAGCCACAACCCCCCTCTTCCATCTCCATCCACAAAATCTTACCTTCTTCTTCTTCGGCCACAAGCACGCCGCCACTCAACCACCTCCACTTCCGATGACCACCACTCTTTCACTATCTCCTACCTCACCACCAAGTGCGGCTTCTCCCATGAAGACGCTCTCAGAGCAAACAAGCGCGTTCGCTTTGACACCCCCGTCAAGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCCCTCTCCCAAATAGCCACCATCATGTGCAAGATTCCCGTGGTACTCACATATGACCCCACCAAAGCGATCTTGCCAAAGTTTCAATTTTTGGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAAGAGTCCCAACTTCTTGCTTCGAAGCCTTAACCATATAGTATCCTTCTACGAATTGGTAAGGAGGTTCTCTCCCTCTGATCTTAAAGCCATTGCTTATCTAACTGGATGCCCATCATCCATTGCTGATGTTCGTGTGCCTCAAAATGTGAAAATGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACAGTGTAATTTCAGTGTGGTGTTGCTGGCCAAAAAGGCCGTAACTAAGTCCCAATGGGATGCTAAAGTTGATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCGGAGGCCTTTAGGAGGCACCCTCATTTTATGCTACGTTCCGAGGACAAACTCAATGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGTTTCGCATTAGACCGTGCTTTTTGGATACAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTGA 1017 0.468 MFHSKHHSLTRALLFFLSHNPPLPSPSTKSYLLLLRPQARRHSTTSTSDDHHSFTISYLTTKCGFSHEDALRANKRVRFDTPVKPDSVISFFKAHGFSLSQIATIMCKIPVVLTYDPTKAILPKFQFLASKGASPSDIVLMTTKSPNFLLRSLNHIVSFYELVRRFSPSDLKAIAYLTGCPSSIADVRVPQNVKMLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSQCNFSVVLLAKKAVTKSQWDAKVDVLKKWGWSEQDFSEAFRRHPHFMLRSEDKLNAVMSFWISNLGWDSSAFRIRPCFLDTVWRRGLFLELRLSNIFSPMV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3487 338 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Amo01g3487 338 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Amo01g3487 338 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Amo01g3487 338 Pfam mTERF 89 298 IPR003690 GO:0003690|GO:0006355
Amo01g3487 338 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 314 - -
Amo01g3487 338 Gene3D Transcription termination factor 3, mitochondrial 183 334 IPR038538 -
Amo01g3487 338 Gene3D Transcription termination factor 3, mitochondrial 67 182 IPR038538 -
Amo01g3487 338 PANTHER CGI-12 PROTEIN-RELATED 28 314 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3487 Amo-Chr1 107525656 107527128 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g3487 mTERF 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3487 K15032 - gmx:102666739 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3487 01 107525656 107527128 Amo14g1516 14 26402678 26404050 PCT
Amo01g3487 01 107525656 107527128 Amo04g0388 04 7600643 7609952 PCT
Amo14g1516 14 26402678 26404050 Amo01g3487 01 107525656 107527128 PCT
Amo04g0388 04 7600643 7609952 Amo01g3487 01 107525656 107527128 PCT