Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3478 ATGCTTAGTCCTGAAGGAGAAATAAAAATAAGTTTTGGCTATCAGTGCAACAATATTGAAAGAGGTGGCATCCCTTGTGAGGTGGCCAATCGCCACAATATCCTTCCTGAAGTCCGTAGGACAAGCAGTTTCTCGTGCTTGTCAGGAGCGGCCTTAAGCGCAAACGCTACACTCGCCAACACAAACCTCTGCAATGGTAAGATAGGAGGTGAAATTCTTCCAAGTTGGGACTCTCCTAATTCATTTCGCAAGGTGCCCTCTTCACCAAGTCTTTCAAAGCTGGAAAGGCTATCATCTTCTCTGCCAAGTAGTTTATCTTACCTAAGTTGTAGTCCTTCCACCTCAAGTGATATACTAGAATATGACYCCTGCACATTCAAGTCCATGAGCGATCCTACCAGAACTGAAGGTTTTCTTAATGCTACCGAACTACAAGTGGCRGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCGGTATGTTCTGAAGAGAAYGGATGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGTAGAGATGCAGCTGACTTTCTGGCTGGTACACTCTATGATACCATCATATCTCACTTGAACAAGTTATTTTGGGAATTTGAGCCAGTTTCCATGGTAGAATCTGAAAATTTGATAAGTTTGGGTGGATCCCCTCAATATAACTTAGAGCAGAACCACAGCCTTATTTGTGAAGCAGACCGATCCCTTTCACACAGGGTACTTGATAGCCTCCAATGTGCTCTTACTCAAGCTGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGATCGTCCAGATTTAGTTTCAATTGGATCTTGTGTTTTAGTTGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTAGGTGACAGCAGAGCAGTATTGGCAACATGCAGTCRTGGCGATGGAAKRCTCAAGGCTATCCAGCTTACTGATAGCCATACCGTCGACAATGAAGCCGAAAGAGCTACACTTGTAGCCAATCATCTTGATGATCCCAAGGTTGTTGTAGCAGGAAAGGTGAAAGGGAAGCTCAAGGTTACTCGCGCCTTTGGAGTCGGCTACTTGAAAAAAAGAAATCTCAATGATGCTTTGATGGGAATCCTTCGAGTGCGTGATCTAACAAGCCCTCCRTATATTTCCACTCAACCATCACTGAATGTCCATAAAATCTCGAATTCTGATCAATTTGTTGTGGTAGGGAGTGATGGTTTATTCGACTTCTTCAGCAACGTTGAGGCAGTAAAGCTTGTTGAGTCTTATATCTTGAGCAACCCTTTGGGCGATCCRGCAAAGTTTCTCATAGAAGAGCTTGTAGCTAGAGCAGCTCATTCTGCAGGTTTGACCATGGAAGAGTTGATGAATATTCCTGCTGGAAGAAGAAGGAAGTACCATGATGATGTGACTGTAATGGTGATCATGCTTGGGATGAATCAGAGGACTTCCAAGGCATCAACTTGCATCTAA 1485 0.431 MLSPEGEIKISFGYQCNNIERGGIPCEVANRHNILPEVRRTSSFSCLSGAALSANATLANTNLCNGKIGGEILPSWDSPNSFRKVPSSPSLSKLERLSSSLPSSLSYLSCSPSTSSDILEYDXCTFKSMSDPTRTEGFLNATELQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISHLNKLFWEFEPVSMVESENLISLGGSPQYNLEQNHSLICEADRSLSHRVLDSLQCALTQAENDFLYMVEQEMEDRPDLVSIGSCVLVVLLHGNDLYTLNLGDSRAVLATCSXGDGXLKAIQLTDSHTVDNEAERATLVANHLDDPKVVVAGKVKGKLKVTRAFGVGYLKKRNLNDALMGILRVRDLTSPPYISTQPSLNVHKISNSDQFVVVGSDGLFDFFSNVEAVKLVESYILSNPLGDPAKFLIEELVARAAHSAGLTMEELMNIPAGRRRKYHDDVTVMVIMLGMNQRTSKASTCI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3478 494 PANTHER PROTEIN PHOSPHATASE 2C 2 493 IPR015655 GO:0004722|GO:0006470
Amo01g3478 494 Pfam Protein phosphatase 2C 161 447 IPR001932 -
Amo01g3478 494 SMART PP2C_4 129 479 IPR001932 -
Amo01g3478 494 Gene3D - 107 490 IPR036457 -
Amo01g3478 494 ProSiteProfiles PPM-type phosphatase domain profile. 138 481 IPR001932 -
Amo01g3478 494 SUPERFAMILY PP2C-like 152 482 IPR036457 -
Amo01g3478 494 CDD PP2Cc 151 479 IPR001932 -
Amo01g3478 494 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3478 Amo-Chr1 107379236 107382018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3478 4 494 PP2C-type Phosphatase Gene Family AT3G16560 64.990 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3478 - - adu:107464162 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3478 01 107379236 107382018 Amo11g2647 11 134550361 134553236 hybridization
Amo01g3478 01 107379236 107382018 Amo04g0367 04 6881593 6883389 PCT
Amo04g0367 04 6881593 6883389 Amo01g3478 01 107379236 107382018 PCT