Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3445 ATGGCGGGTGATCATTTCAACACCATGGACGATAAGAAGAGGAAGAAGAGGATCGCCTTGATTAGCGTCTCTTCCATTCTCCTCGTGGCCATGGTTGCTTGCGTTGCAGTGGGAATTGACAAGAGCGCTATGGAAGAAGAAGAAACCAGCAGTAGCACCAACACAATTGTAAAGAACCAGAAGAACGTGCATGTGATTTGCGAATCAGCGGAGTACAAAGACACGTGCGAGAAGAGCCTCGAGAAGGCCACCGCCAACGGCACCACCGACACGAAACAACTCATCATTGCTGCCTTCAACGCCACCGCGGAGGAAATTGAGAATCAGATCAACGACTCAAGCCTCGTCCAAAAGTTGGTGACCGACGACAGGAGCAAGCAGGCGTTGGATATTTGTAAGGAGGTTCTTGGTTACGCCATTGACGATATCCACAGATCTGTTCACATGATGGAGAAGTTCGAGCTGAGAAGGATCGGTCAGTACGCTTACGACCTCAAGATTTGGATCGCCGGTACACTCGCTCACCAGCAAACTTGCTTGGAAGCCTTCGAGAACGTTCCAACCGAAGCTGGCAAGGAGATGGCTAAGGTTTTGAACACCTCTCTCCAGCTAAGCAGCAACGCCTTGGATATCATCAATGGCGCCAGCAAGATCTACAAGAGCTTCAACTTGGATGCCTTCTTCGGGGATAGTGCCGCCGCCCCATCCCCAGTCCCCGCGGGCAGGAGGCTTCTGTCTGACGTGGATGAGGGTTTGCCTTCGTGGATCGAGCAAGGCCGAAGGAGTCTACTCGAAGACCCCACTCATCTGAAACCCGATTGTGTTGTGGCTCAGGACGGCAGCGGAAACTTCAAGACTCTCACGGAGGCCCTCCAGACTGTTCCTAAGAACAACAGGAAGCGTTTCGTCATCTACGTCAAGGCAGGCATCTATAAGGAGTATGTTAACTTGCAGAAGTCCATGTCCCACGTCACCATTATCGGAGATGGCCCCACAAAGACTAGATTCTCCGGCAGCAAGAATTATGTTGATGGTCTCCAGACTTACTACACCTCAACTTTCAGTGTAAATGCCGCTAACTTCATGGCGGTAAATGTTGGGTTTGAGAACACAGCAGGAGCGGAGAAGCACCAAGCGGTGGCACTCCGCGTGACAGCAGATCAAGCAGTGTTCTACAACTGCCACATGGATGGATACCAAGACACGCTATACGTGCAATCACAGAGGCAGTACTACCGCGACTGCACGGTGACGGGCACCGTTGACTTCGTGTTTGGTGACGCAGCGGGAGTGTTCCAAAACTGCACCTTCATTGTGAGGAAGCCCCTGGAAACCCAACAATGCATGGTCACTGCTGGTGGAAGGACCAAGATTGATAGCCCAACCGCCCTGGTGTTCCAGGACTGCCGCTTCACGGGCACACCAGAGTTGAAGAGCTTGCCCCGCAAGGTGTCGTACCTTGGAAGGCCATGGAGAGTGTTCTCCAAGGTTGTGATAATGGACTCTGATATTGATGATATCTTCAGTCCAGAAGGGTACATGCCGTGGATGGGAACAGCGTTCAGGGACACATGCACGTATCTTGAATACAACAACAGGGGACCTGGTGCTGTTACAAAAGGTAGAGTCACATGGCCTGGTGTTAGGGTCCTCACCTCTCTCGAGGCTGATCTATACTACCCTGGAAGGTTCTATGAGATCTCTAACCATACTGAGCGTGATGCTTGGATCGTTGATTCTGGGGTCCCTTACAATCTCGGCCCAAACAGCCCCTTCAAACTCCCATCCTTATCATTCTCACTCCCATCCATAACTTTCCCTAAGTTGGTTTAA 1833 0.5145 MAGDHFNTMDDKKRKKRIALISVSSILLVAMVACVAVGIDKSAMEEEETSSSTNTIVKNQKNVHVICESAEYKDTCEKSLEKATANGTTDTKQLIIAAFNATAEEIENQINDSSLVQKLVTDDRSKQALDICKEVLGYAIDDIHRSVHMMEKFELRRIGQYAYDLKIWIAGTLAHQQTCLEAFENVPTEAGKEMAKVLNTSLQLSSNALDIINGASKIYKSFNLDAFFGDSAAAPSPVPAGRRLLSDVDEGLPSWIEQGRRSLLEDPTHLKPDCVVAQDGSGNFKTLTEALQTVPKNNRKRFVIYVKAGIYKEYVNLQKSMSHVTIIGDGPTKTRFSGSKNYVDGLQTYYTSTFSVNAANFMAVNVGFENTAGAEKHQAVALRVTADQAVFYNCHMDGYQDTLYVQSQRQYYRDCTVTGTVDFVFGDAAGVFQNCTFIVRKPLETQQCMVTAGGRTKIDSPTALVFQDCRFTGTPELKSLPRKVSYLGRPWRVFSKVVIMDSDIDDIFSPEGYMPWMGTAFRDTCTYLEYNNRGPGAVTKGRVTWPGVRVLTSLEADLYYPGRFYEISNHTERDAWIVDSGVPYNLGPNSPFKLPSLSFSLPSITFPKLV* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3445 610 SMART PMEI_2 58 211 IPR006501 GO:0004857
Amo01g3445 610 PANTHER PECTINESTERASE 10 591 - -
Amo01g3445 610 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 214 IPR006501 GO:0004857
Amo01g3445 610 ProSitePatterns Pectinesterase signature 1. 298 317 IPR018040 -
Amo01g3445 610 PANTHER PECTINESTERASE 10 591 - -
Amo01g3445 610 SUPERFAMILY Pectin lyase-like 270 557 IPR011050 -
Amo01g3445 610 Pfam Pectinesterase 273 564 IPR000070 GO:0030599|GO:0042545
Amo01g3445 610 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 213 IPR035513 -
Amo01g3445 610 Gene3D - 270 588 IPR012334 -
Amo01g3445 610 Pfam Plant invertase/pectin methylesterase inhibitor 63 211 IPR006501 GO:0004857
Amo01g3445 610 CDD PMEI-like_3 66 217 - -
Amo01g3445 610 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Amo01g3445 610 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 215 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3445 Amo-Chr1 107016910 107019158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3445 10 605 Carbohydrate Esterase AT3G05610 42.079 1.81e-174 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3445 K01051 - gmx:100800194 793.882