Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3434 ATGGTGGATTCAACTGGAAAAGGATCGGACTCCTCCGGCGGCGGTGGTAAGAGTCCAACCACCGAGCTGAAGAAGACGTGCGCCGACTGCGGCACATCCAAGACTCCTCTATGGAGAGGTGGTCCCGCTGGCCCTAAGTCTCTATGCAACGCGTGCGGGATCAGGAGCCGGAAGAAGAAGAGAGCCATTCTCGGAATCACGAGAGGAACCGCCGACGATGTTAAGAAGGGGAAAAGGAGCAACACCGCCGCCAATAATAGCTTGAATTTCAAGCAGCGGTTTATGGCATTGGCGAGGCAAGTCATGACGAAGAAATCGAATAATCTTGCGCACAGCCACAGGAACAAGTTGGGAGAGGAGGAACAAGCAGCTGTTCTTTTAATGTCCCTCTCTTACGGATCCGTTTATGCTTAA 414 0.5266 MVDSTGKGSDSSGGGGKSPTTELKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGITRGTADDVKKGKRSNTAANNSLNFKQRFMALARQVMTKKSNNLAHSHRNKLGEEEQAAVLLMSLSYGSVYA* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3434 137 SMART GATA_3 21 73 IPR000679 GO:0006355|GO:0043565
Amo01g3434 137 MobiDBLite consensus disorder prediction 1 19 - -
Amo01g3434 137 PANTHER OS01G0976800 PROTEIN 17 137 - -
Amo01g3434 137 ProSiteProfiles GATA-type zinc finger domain profile. 21 57 IPR000679 GO:0006355|GO:0043565
Amo01g3434 137 PANTHER OS01G0976800 PROTEIN 17 137 - -
Amo01g3434 137 MobiDBLite consensus disorder prediction 1 26 - -
Amo01g3434 137 Gene3D - 22 116 IPR013088 GO:0006355|GO:0008270
Amo01g3434 137 Pfam GATA zinc finger 27 61 IPR000679 GO:0006355|GO:0043565
Amo01g3434 137 ProSitePatterns GATA-type zinc finger domain. 27 52 IPR000679 GO:0006355|GO:0043565
Amo01g3434 137 CDD ZnF_GATA 26 79 IPR000679 GO:0006355|GO:0043565
Amo01g3434 137 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3434 Amo-Chr1 106908016 106909195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3434 24 137 C2C2-Gata Transcription Factor Family AT3G06740 62.609 5.34e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo01g3434 GATA 1.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3434 - - aprc:113847917 166.007