Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3420 ATGATGATGGCAAATAACTTTGCGGGCCGGTTGGTAGGCTCAGAGATTCATGGATTCCACACATTGCAAGACTTGGATTTGGGAAACATAATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCACGCCATACTTTGCAATTCCAAGTACTTCACAATCAATGTCAAGCCAGTGAATTTGCCCACATGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGGAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGTAAAACTGTTAAAGAAGCTCATGAGCACTTAAAGGTTGGTAACGAAGAAAGGATCCATGTCTATTATGCACATGGACAAGATAACCCAGGCTTTGTTCGTAGATGTTATTGGTTACTTGACAAGAGTTTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTTGCAAGCTTCTCCTGCCGCACCCATAAATTCGCACTCTAGTTCTGGCTCTGACCCAAATGCCCCATGGATTTTATCCGAAGAAATAGATTCCGGGATCAAAACTACAAATGCTGGTGAGATTAATAACAATATAACCGTCAAGARTCACGAGCAAAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCCTAACACWTCGACTATTAATGGAGGAGGCAAAGTTCCACATTTTGATCAACAGAATCAAAGTAATCTCAGCAATCAGGTAGCCAACAATCTTTCTGCAGAAATCCCTTCTTTTGATAATCTAACGCAACCAATTGCTGGGAGTCACACTTTTCCGGAGAATCTTAATCTTCAGACAGACAATCAAATGAATCCAAATGAGCAGATAAATCATAATGTCTTAGTTAATGGTGTTTCCTTGGACACTTTGGGCAATGGTGGATTGCAAAGTCAGGATAGCTTTGGAATGTGGGTGAACCATATGTTGTCGGATTCGCCATGTTCAGTAGATGAGTCAGCTGTTGAATCATCAGTGTCATCCATTCACGAATCATATTCATCTCTAGTAGGGGATGATAAGCAAACTTCTTTGCCAGAACAAGTATTTAATCTCACTGATGTGTCACCTGCATGGGTGCCTTCTACTGAGAAATCAAAGATCCTCGTGACTGGATTCTTTCATAAGGATGCTGACCTTTCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAATGTGTTCAGGTTGGGGTCTACCGATGTTGGGTACCTCCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAACCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTCTGCATGATCCTGTGGCTTTTATGGAAAACAATGACAACTGGGACAAGTTCCAATTCGAGATGAGGCTTTCTTATCTACTTTTTACCAAAAAGAATAGTCTTGATGTTTTCTCGTGTACAGTATCACCTAAGAGACTAAAGGAGGCGAGAAACTTTGCCATCAGAACGTCGTTTATTTCCAATAGTTGGCAATACTTGATGAAGTCAACTCAATACAACAGAATTCCGTATTCACAAGCAAAAGAAGACCTATTTGGAATTTCTTTAAGAAGCAGACTAAAGGAATGGATTTTGGAAAGAATTATTTTAGGCTGTAAGACTACTGAATATGATGCACAAGGCCAAAGTGTAATCCATTTGTGCGCGATTCTGGATTATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGACAAGCTTGGGTGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTTTTGTCGGCTGGGGCAAAGCCAAATTTGGTTACAGATCCAACTCCACAAAATCCTGGTGGACAAACTGCTGCTGATCTCGCATATATGAACGGTTATGATGGCTTAGCAGCATATCTTTCAGAAAAGGCTCTGGTGAGGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCCAGCTAGAAACCAACACAACTGACCCAGAAGATCCTGAGAACCTTTCAGAGGACCAGCTGTACCTGAAGGATACATTGGCAGCTTACCGAACAGCTGCTCAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCATTCCCTAAAACTGCAAACTGAAACCATTGAGCTTTTGACACCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCACGCCTTTAGGAACTTCGAGTCAAGGAAAATGATGAAAGCTGCTGCTCGCATTCAGTACACATATCGCACATGGAAGATTCGCAGAGAATTCCTCAACATGCGTCATCAGGCAATTAAAATTCAAGCTGCTTTCCGGTGCTTTCAATTGAGGAAGCATTATCGTAAAATTTTGTGGTCTGTCGGGGTGGTCGAGAAAGCACTATTGCGTTGGCGTTTAAAGAGAAAAGGTTTGCGTGGGCTGCATGTTAACAATGCCGATCAGAAGWAGGAAGGTGATGGAGAGGAGGAATTCTTTCGAATTGGTAGGAAGCAAGCTGAAGAGCGTGTYGAGAGATCTGTAGTGCGTGTGCAGGCCATGTTCCGTTCAAAGAAGGCACAACAAGATTATAGGAGGATGAAGCTGGCCCTTAATCAAGCAAATCTGGATCGGGAATATGAAGAATTCCTTGGTACGGAAGATAACATGGAAATTTAA 2727 0.4217 MMMANNFAGRLVGSEIHGFHTLQDLDLGNIMEEARTRWLRPNEIHAILCNSKYFTINVKPVNLPTCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQELQASPAAPINSHSSSGSDPNAPWILSEEIDSGIKTTNAGEINNNITVKXHEQRLHEINTLEWDDLVVANDPNTSTINGGGKVPHFDQQNQSNLSNQVANNLSAEIPSFDNLTQPIAGSHTFPENLNLQTDNQMNPNEQINHNVLVNGVSLDTLGNGGLQSQDSFGMWVNHMLSDSPCSVDESAVESSVSSIHESYSSLVGDDKQTSLPEQVFNLTDVSPAWVPSTEKSKILVTGFFHKDADLSKSNLLCVCGDVSVPVECVQVGVYRCWVPPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPVAFMENNDNWDKFQFEMRLSYLLFTKKNSLDVFSCTVSPKRLKEARNFAIRTSFISNSWQYLMKSTQYNRIPYSQAKEDLFGISLRSRLKEWILERIILGCKTTEYDAQGQSVIHLCAILDYTWAVSLFSWSGLSLDFRDKLGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPGGQTAADLAYMNGYDGLAAYLSEKALVRQFNDMSLAGNISGQLETNTTDPEDPENLSEDQLYLKDTLAAYRTAAQAAARIQAAFREHSLKLQTETIELLTPEAEARKIVAAMKIQHAFRNFESRKMMKAAARIQYTYRTWKIRREFLNMRHQAIKIQAAFRCFQLRKHYRKILWSVGVVEKALLRWRLKRKGLRGLHVNNADQKXEGDGEEEFFRIGRKQAEERVERSVVRVQAMFRSKKAQQDYRRMKLALNQANLDREYEEFLGTEDNMEI* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3420 908 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Amo01g3420 908 MobiDBLite consensus disorder prediction 153 172 - -
Amo01g3420 908 Gene3D - 539 667 IPR036770 -
Amo01g3420 908 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 907 - -
Amo01g3420 908 MobiDBLite consensus disorder prediction 153 170 - -
Amo01g3420 908 Pfam IQ calmodulin-binding motif 788 805 IPR000048 GO:0005515
Amo01g3420 908 SMART CG_1_2 30 148 IPR005559 GO:0003677
Amo01g3420 908 SUPERFAMILY E set domains 362 448 IPR014756 -
Amo01g3420 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 811 IPR027417 -
Amo01g3420 908 ProSiteProfiles IQ motif profile. 745 771 IPR000048 GO:0005515
Amo01g3420 908 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 907 - -
Amo01g3420 908 ProSiteProfiles IQ motif profile. 861 889 IPR000048 GO:0005515
Amo01g3420 908 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Amo01g3420 908 SUPERFAMILY Ankyrin repeat 552 659 IPR036770 -
Amo01g3420 908 SMART ANK_2a 636 667 IPR002110 GO:0005515
Amo01g3420 908 SMART ANK_2a 597 626 IPR002110 GO:0005515
Amo01g3420 908 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Amo01g3420 908 ProSiteProfiles IQ motif profile. 761 790 IPR000048 GO:0005515
Amo01g3420 908 Gene3D - 759 808 - -
Amo01g3420 908 ProSiteProfiles Ankyrin repeat region circular profile. 597 625 - -
Amo01g3420 908 SMART iq_5 760 782 IPR000048 GO:0005515
Amo01g3420 908 SMART iq_5 859 881 IPR000048 GO:0005515
Amo01g3420 908 SMART iq_5 783 805 IPR000048 GO:0005515
Amo01g3420 908 Coils Coil 873 893 - -
Amo01g3420 908 Pfam Ankyrin repeats (3 copies) 552 626 IPR002110 GO:0005515
Amo01g3420 908 Gene3D Immunoglobulins 357 451 IPR013783 -
Amo01g3420 908 ProSiteProfiles IQ motif profile. 784 808 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3420 Amo-Chr1 106756780 106763808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3420 30 893 CAMTA Transcription Factor Family AT3G16940 55.709 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Amo01g3420 CG-1 2.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3420 K21596 - gmx:100793970 1389.4