Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3401 ATGGGAACGCCACCAACGGAAGAGCTTATGAAGAAGATCGAGCAGCTAGAGGAAGGTCACGAGCATCTCAAGCAAGAGATGTCAAGGCTCAAGCTTTCTGATGCCACCAGAAGCCACCACCACCATCGCCAGAGGTCTCACTCCGTCTCTCCCCAGCGTTCTAGATTGGGTGCACCGCCGAAGAGGGGACCCGCCGATGGAGCCTCAGCTGCCGCATGGAAGAGAGGCTCTTGTTCCTTTAAGCAATCTTCACCTCTGCAGAGAGAGAGTCGCAGTGATCCCAAAAAAGAAGGTGAAGGAGGTGGTGGTGCAAAGTGTGGTCCTTCCGCCGTGAATTTTACTGATAGACAGTATCTTAATATTTTGCAGTCAATGGGACAGTCCGTTCATATATTGGATCTTACCTCTCGGATAATCTACTGGAACCGGAGTGCCGAAAATCTGTATGGTTATGCTGCGGAGGAAGCTCTTGGGCAGGATGGGATTGAGCTGATTGTTGACCCCAGGGATTTTGCCTTGGCTGAAGATATTGTGAACCGTGTCGTAATGGGAGAGAGCTGGACTGGGCAATTCCCGGTCAAGAACAAGATGGGAGAGCAGTTCTTGGCGGTGGCGACGAATACTCCTTTCTATGATGATGATGGAAGTTTAGTTGGGATTATCTGTGTCTCGAGTGATTCGCGGCTCTTCGTTGAAACGAGAGTTCCGTGCTTGGGTGCAAACAATGCTGAATCAGGTTCAGGCTCTAGGCCTCTTAGAAGTAGCATTTCAAATAAACTTGGCCTTGATACTCAGCAGCCTCTCCAAACTTCTATAGCATCCAAGTTCTCAAATTTGGCATCAAAGGTAAGTAACAAAGTTAAGTCAAGAATCCGGACTGGAGAAAATAACGGTGATCGTGAAAGCGGGAGCGGAGGAAGTCATCAATCTGAGCATAGTTTCTCAGAAGTTGGTGTTGCAGACCACAGAGAGGATGCTAATTCCAGTGGAGCTAGCACACCCAGAGGTGATGTGATGCAGTCCCCTTTTGGTATATTTTCTCATGGTGAGGAAAGATCCCAAGGAAAAACTTTGAAAGAATATGCCGATGATAGTGAAGGAAAATCTATTCACAAGATTATAACGTCTAGGGCTGAAGCATGGATTCAAAAGAAAACAATGGCATGGCCATGGAAAGCAAATGATCAAGAAGGGTCGGAGGCAAAGGATGTCCGTGTTGCTGTGCCTTTCTTGTCAAATGATCATCAAGAAACTCAGAAGCAAGAACGTCAAGGAGGTGAAAGGAATCGCCCTAGTAACAATGAGGCTTCAGGATCCTGGTCGTCGTCAATCAATATTAACAGCACAAGTAGTGCCAGCAGCTGTGGAAGTGCCGGAAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACCGATTGCTTGGATTATGAAATTTTGTGGGAAGACCTGACTATTGGAGAACAAATTGGACAAGGTTCCTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTATTCTCAAAGCAAGAATATTCAGATGATGTGATACTTTCCTTCAGACAAGAGGTTTCTGTTATTAAAAGGCTTCGGCACCCAAATATTCTTCTCTTTATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGTCGCTTGTTACACAGAAACACGCCGAAACTTGACTGGAGACGACGAGTTCATATGGCCTTGGATATTGCACGAGGTGTGAATTATCTTCATCACTGCAATCCACCTATCATCCATAGAGATTTGAAGTCATCAAATCTTCTAGTTGATAAGAATTGGACTGTAAAGGTTTGTGACTTTGGTCTTTCACGTCTTAAGCATGAAACATTTCTCACGACGAAGACAGGGAGGGGCACACCACAATGGATGGCACCAGAAGTTCTTCGTAACGAACCCTCAGATGAGAAGTCCGATGTATACAGCTTTGGAGTAATATTATGGGAACTTGCAACCGAAAAGATCCCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCCGTGGGGTTCATGGATCAGCGACTTGAAATTCCAAAAGATGTTGATCCACGATGGGCTTCTATAATTGAGAGCTGCTGGCATCGTGATCCAGCTTCCCGTCCAACATTCCGGGAACTACTCGAGAAGCTTAGAGAGCTGCAAAGGCAGTATGCCATTCAGCTCCAAGCTGCTCGATCGGCCGGAGGGGAAAGCCCCCAAAAGGAGTCCTAG 2286 0.4663 MGTPPTEELMKKIEQLEEGHEHLKQEMSRLKLSDATRSHHHHRQRSHSVSPQRSRLGAPPKRGPADGASAAAWKRGSCSFKQSSPLQRESRSDPKKEGEGGGGAKCGPSAVNFTDRQYLNILQSMGQSVHILDLTSRIIYWNRSAENLYGYAAEEALGQDGIELIVDPRDFALAEDIVNRVVMGESWTGQFPVKNKMGEQFLAVATNTPFYDDDGSLVGIICVSSDSRLFVETRVPCLGANNAESGSGSRPLRSSISNKLGLDTQQPLQTSIASKFSNLASKVSNKVKSRIRTGENNGDRESGSGGSHQSEHSFSEVGVADHREDANSSGASTPRGDVMQSPFGIFSHGEERSQGKTLKEYADDSEGKSIHKIITSRAEAWIQKKTMAWPWKANDQEGSEAKDVRVAVPFLSNDHQETQKQERQGGERNRPSNNEASGSWSSSININSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVIKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVCDFGLSRLKHETFLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSMQVIGAVGFMDQRLEIPKDVDPRWASIIESCWHRDPASRPTFRELLEKLRELQRQYAIQLQAARSAGGESPQKES* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3401 761 Gene3D PAS domain 126 229 - -
Amo01g3401 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Amo01g3401 761 MobiDBLite consensus disorder prediction 321 340 - -
Amo01g3401 761 MobiDBLite consensus disorder prediction 15 109 - -
Amo01g3401 761 SMART serkin_6 483 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3401 761 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 759 - -
Amo01g3401 761 CDD PAS 125 226 IPR000014 -
Amo01g3401 761 MobiDBLite consensus disorder prediction 287 316 - -
Amo01g3401 761 SUPERFAMILY PYP-like sensor domain (PAS domain) 118 226 IPR035965 -
Amo01g3401 761 MobiDBLite consensus disorder prediction 15 34 - -
Amo01g3401 761 MobiDBLite consensus disorder prediction 409 445 - -
Amo01g3401 761 Gene3D Phosphorylase Kinase; domain 1 476 560 - -
Amo01g3401 761 PRINTS Tyrosine kinase catalytic domain signature 596 614 IPR001245 GO:0004672|GO:0006468
Amo01g3401 761 PRINTS Tyrosine kinase catalytic domain signature 662 684 IPR001245 GO:0004672|GO:0006468
Amo01g3401 761 PRINTS Tyrosine kinase catalytic domain signature 706 728 IPR001245 GO:0004672|GO:0006468
Amo01g3401 761 PRINTS Tyrosine kinase catalytic domain signature 557 570 IPR001245 GO:0004672|GO:0006468
Amo01g3401 761 PRINTS Tyrosine kinase catalytic domain signature 643 653 IPR001245 GO:0004672|GO:0006468
Amo01g3401 761 Coils Coil 728 752 - -
Amo01g3401 761 CDD STKc_MAP3K-like 489 735 - -
Amo01g3401 761 TIGRFAM sensory_box: PAS domain S-box protein 116 226 IPR000014 -
Amo01g3401 761 SMART pas_2 116 183 IPR000014 -
Amo01g3401 761 Gene3D Transferase(Phosphotransferase) domain 1 562 748 - -
Amo01g3401 761 Pfam PAS fold 117 224 IPR013767 GO:0006355
Amo01g3401 761 MobiDBLite consensus disorder prediction 298 314 - -
Amo01g3401 761 SUPERFAMILY Protein kinase-like (PK-like) 472 734 IPR011009 -
Amo01g3401 761 Pfam Protein tyrosine and serine/threonine kinase 483 735 IPR001245 GO:0004672|GO:0006468
Amo01g3401 761 MobiDBLite consensus disorder prediction 430 445 - -
Amo01g3401 761 MobiDBLite consensus disorder prediction 35 49 - -
Amo01g3401 761 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 30 759 - -
Amo01g3401 761 ProSiteProfiles PAS repeat profile. 114 185 IPR000014 -
Amo01g3401 761 Coils Coil 6 33 - -
Amo01g3401 761 ProSiteProfiles Protein kinase domain profile. 483 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3401 Amo-Chr1 106613881 106619235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3401 1 752 MAP Kinase Kinase Kinase AT3G06620 60.000 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo01g3401 PK_Tyr_Ser-Thr 2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3401 - - pvu:PHAVU_003G114400g 1160.59