Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3400 ATGATGTCGAGCTGCAGCATGGATGCTGGACCTGAGCAACTGTGCTACATACCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCTTGTTCGACATGGTAACGGTTCGATGCGGTCACTGCACCAATCTCTGGTCCGTAAACATGGCTGCGGCCTTTCAATCACTCTCATGGCAAGATCTTCAGGGCCCTGGGCAGTGCAATCAGGAGTATAGGATTGACACAAATATTAATATGAATAATGGTGGCTCCTCTTCCAAATGCAACAATAGTAGTAGGCTTGCATCAATGCGTGCACCTACCAATCATGTTACTCAGGAAAGGGCTGTCAACCGCCCACCCGAGAAAAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATCCAGAGGATTAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCAGCAAAGAACTGGGCACATTTTCCTCGTATTCATTTTGGGCTAATGTTGGAGAGCAACAATCAAGCTAATAAGATGGATAATGCCTCTGAGAAGCATTTGATGTCAAGGGCTGCACCTGCACTGTTGAATAAATGA 603 0.461 MMSSCSMDAGPEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDLQGPGQCNQEYRIDTNINMNNGGSSSKCNNSSRLASMRAPTNHVTQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPRIHFGLMLESNNQANKMDNASEKHLMSRAAPALLNK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3400 200 MobiDBLite consensus disorder prediction 102 121 - -
Amo01g3400 200 PANTHER AXIAL REGULATOR YABBY 5 2 188 - -
Amo01g3400 200 Gene3D High mobility group box domain 107 167 IPR036910 -
Amo01g3400 200 PANTHER PROTEIN YABBY 6-RELATED 2 188 IPR006780 GO:0007275
Amo01g3400 200 Pfam YABBY protein 11 170 IPR006780 GO:0007275
Amo01g3400 200 SUPERFAMILY HMG-box 115 163 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3400 Amo-Chr1 106565145 106568229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3400 12 178 C2C2-YABBY Transcription Factor Family AT2G26580 72.455 8.57e-83 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo01g3400 YABBY 9.5e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3400 K25796 - gmx:100499942 336.265