Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3391 ATGATCTACGAAGATTTGAAAAGTAATTTGTTTATAACTAATTCTGGTTCTTGTTGCAGGAAGGGGGAGAATGAACATGATGGTCATTCAGCCTATGGAAGTAGAACTGTTAGGGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATCGATATTCTTGATGATGCCTACAGATGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAATGCAAGGAGTTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGGAAACATGTTGAGCGAGCCGCGACTAATATAAAATCAGTGATCACAACTTATGAAGGGAAACACAACCATGATGGCCTGCAGCACGTGGCAGCGCAGCAATGCACCGGCGCACCAATAAGGCCTGCGGCCGTGAATGGTTATTCTAGCGCGCTGAATTTCACGAATTCACTTTACAATCCTAGGCTTCCGGCCACCGGAACTCAAGAATCATCTTCCCTAGACATGCTGCAAGGCTCTGGACTTTTCGGCTACACGTCTCTTGGAAGATCAATGGGTTCATATGGAAACAATACGCAACTTTCGGATGGTGTATACATCAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTCGAAAAGAAAGCGAAAAAGCCAGAGATGAGTGCTGACACTGCTAAACAAATGAATGCAAAAATGGACATGCAAATGGCTGTACTTGAAGAATCAGTGAATATATTGTCTGAGTTTTCTCTCATTCTGTTTGTTATTGGAATTGYTGAAGATGCTGATGATAACAACAGATATGCCATGATCTGCAACCAAAAACAG 810 0.4235 MIYEDLKSNLFITNSGSCCRKGENEHDGHSAYGSRTVREPRVVVQTTSEIDILDDAYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAATNIKSVITTYEGKHNHDGLQHVAAQQCTGAPIRPAAVNGYSSALNFTNSLYNPRLPATGTQESSSLDMLQGSGLFGYTSLGRSMGSYGNNTQLSDGVYIKAKDERKDDSFLEKKAKKPEMSADTAKQMNAKMDMQMAVLEESVNILSEFSLILFVIGIXEDADDNNRYAMICNQKQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3391 270 SUPERFAMILY WRKY DNA-binding domain 45 111 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3391 270 SMART WRKY_cls 53 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3391 270 Gene3D WRKY domain 40 106 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3391 270 ProSiteProfiles WRKY domain profile. 48 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3391 270 Pfam WRKY DNA -binding domain 54 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3391 270 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 224 IPR044810 GO:0003700
Amo01g3391 270 PANTHER OS04G0471700 PROTEIN 23 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3391 Amo-Chr1 106454533 106456367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3391 21 171 WRKY Transcription Factor Family AT2G38470 55.828 4.06e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g3391 WRKY 4.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3391 K13424 - adu:107472292 341.658