Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3374 ATGACCACGATCACCACCTCCGGTACTCCCACCCTGACCACCATCACCTCTACCTTAGTGGCCCTCGTAACCACCTCCACCACCTCCCTGACCTCCCGTCACCACCGTTGTACCCTCCTCCACCACCACCACTTCCCTGACCCCGTCGTCACCTCCATCGTCTCCGTCATCACCACCTTCGTCCTCACCGCTACCCTCATCCTCTCCGCCTCTGCCTCCACGTCGGCCTCTACCTCACCACCACCTCTAGCTCCTCTACGGCCGCGACCCCTCCCCCCTCGCCGTCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAAAAGAATCAAAAGACCCTGTGGTTCAGTTTCTGGAAGGAGAACTTCTCATAGTGTGTTTGTATTCCAATCCAGGTGGACGCTTTGCCTCAAGGGAAAAAATGAGCCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAACTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGGGCTATGTCTTTGACCTTGAACAAGTTCCTGCATACTCATGCTTTATAGGCTATGTTTCATGGCAGGTAATAATTTCTGCTTTTCGGGATTGGCTGTTATGGATGTTCCCGCTTTCTTCCTTGTCAGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGTGATATATACTAATTCTGCAGATGCCAAGATTCCTGCTGCTCTTGAGTATCTCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGAGATACATGACACTTACAAAAACTGTTAAAAATTTCCAGAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACAATTGGTTACAGATTTCCGGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACAATCCTGGACTCCAGGTGACCTAATTCGGCCAATGATCGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTCGGAAGTCGGAACATCAGCCTGA 1233 0.4801 MTTITTSGTPTLTTITSTLVALVTTSTTSLTSRHHRCTLLHHHHFPDPVVTSIVSVITTFVLTATLILSASASTSASTSPPPLAPLRPRPLPPRRPTIPNPSHQTPFPIPVLKKESKDPVVQFLEGELLIVCLYSNPGGRFASREKMSLLKNCRSFLSNFFFIPVGMLQRNSNMTRGYVFDLEQVPAYSCFIGYVSWQVIISAFRDWLLWMFPLSSLSEAEKVLGEISNYKVQLEVIYTNSADAKIPAALEYLGTVIEAGCKFLIFAHHQPMRYMTLTKTVKNFQKKKVGCIRIDGGTPAASRQQLVTDFREKDYIKAAVLSIKAGGVGLTLTAASTVIFAEQSWTPGDLIRPMIVLDGHENTLAVSNNQPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRSEVGTSA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3374 410 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 230 351 IPR030101 GO:0006281|GO:0031297|GO:0036310
Amo01g3374 410 SMART helicmild6 278 354 IPR001650 -
Amo01g3374 410 Pfam Helicase conserved C-terminal domain 255 351 IPR001650 -
Amo01g3374 410 MobiDBLite consensus disorder prediction 81 106 - -
Amo01g3374 410 MobiDBLite consensus disorder prediction 73 108 - -
Amo01g3374 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 351 IPR027417 -
Amo01g3374 410 CDD SF2_C_SNF 243 348 - -
Amo01g3374 410 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 230 351 - -
Amo01g3374 410 Gene3D - 212 354 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3374 Amo-Chr1 106193191 106197100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3374 228 347 RAD5 or RAD16-like Gene Family AT5G22750 30.000 4.73e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3374 K14440 - ahf:112723252 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3374 01 106193191 106197100 Amo11g2554 11 132810065 132817853 hybridization