Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3371 CGTGAAAAGATTGAGATAAAGCTCATCCAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAAAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTCTCGCTCATCATCACAAAGAAGATCATTGATCCGTATCAGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATACTAATAATAAGCTCAGAAGACAGATCAGGAGTCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTCTCAGCAACTGCGTACTCTTGAAGAGGATATGGTTTCTGCCATTGCCAAAATACGCCACTGTCAACCCCCCAGCGGCCGCCACTCTTTTCATCCTCACCTTCTCTCTGTGCTCGTCGCGAAGCCCTATCAGCCGCCGCTACTCTTCTCCTCATCACCGTATATATGTGCTCGTCGGGAAGCCCGCCTCTGTGGTCGTTGGCGACGGCAGTGA 522 0.4655 REKIEIKLIQNPTNRQVTYSKKRNGIFKKAHELSVLCDAKVSLIITKKIIDPYQKTLGDIDLWHSHYEKMLENLKKLKDTNNKLRRQIRSRIGEGSLDMDDMSSQQLRTLEEDMVSAIAKIRHCQPPSGRHSFHPHLLSVLVAKPYQPPLLFSSSPYICARREARLCGRWRRQ* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3371 173 PANTHER APETALA3 1 124 - -
Amo01g3371 173 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Amo01g3371 173 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Amo01g3371 173 ProSiteProfiles MADS-box domain profile. 1 45 IPR002100 GO:0003677|GO:0046983
Amo01g3371 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 47 IPR002100 GO:0003677|GO:0046983
Amo01g3371 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 124 - -
Amo01g3371 173 Coils Coil 67 94 - -
Amo01g3371 173 Pfam K-box region 64 123 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo01g3371 173 Gene3D - 12 92 IPR036879 GO:0003677|GO:0046983
Amo01g3371 173 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677|GO:0046983
Amo01g3371 173 PRINTS MADS domain signature 36 57 IPR002100 GO:0003677|GO:0046983
Amo01g3371 173 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3371 Amo-Chr1 106166086 106166908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3371 1 122 MADS-box Gene Family AT3G54340 48.551 8.42e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo01g3371 K-box 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3371 K09264 - gmx:100784496 197.978