Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3370 ATGAAGAAGGTGAGGAATAAGATCGGAAAGTATGAGGTTGGTAGAACCATCGGCGAAGGTACATTCGCCAAGGTCAAATTCGCCAAGAACACCGACACCGGAGACAGCGTTGCCATTAAGGTCATGGCTAAGTCCACCATTCTCAAGCATAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGACATCCAAATATAGTTAGGTTGCATGAGGTTTTGGCCAGCAAGACCAAGATCTACATAATTCTTGAGTTCGTAATGGGAGGGGAATTATATGATAAAATTGCTCAGCAGGGAAAGCTTTCTGAAAATGATTCTAGGCGCTACTTTCAACAACTTATAGATGCTGTTGCTCATTGTCACAAGAAGGGTGTGTACCACAGAGACTTGAAGCCTGAAAACCTTCTTCTTGATGCATTCGGAAACTTGAAAGTATCTGACTTCGGATTGAGTGCATTGACAAAGCAGGGTGTTGATGTTCTCCACACGACGTGTGGGACCCCAAATTATGTTGCACCTGAGGTGCTAGGCAATCAAGGTTATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTGTATGTTTTGATGGCTGGATATCTTCCTTTTGAGGAGGCTGACCTTCCTGCACTGTACAACAGGATCAATGCTGCAGAGTTTGTTTGTCCATTTTGGTTTTCTGCTGGGGCAAAGACATTGATACAGAAAATTCTGGATCCTAATCCTAAAACACGGATGAAAATTGAAGAAATAAGGAAAGATCCATGGTTCAGGAGAAACTATGTTCCGGTCAGACTTAGTGAAGATGTGGAAGTCAATTTGGATGATGTTCAGGCAGTTTTCGATGATATTGAGGACAAATATGTTTCTGAGAAGTCAGAAAGTACTGAGGGAGGTCCTTTGATAATGAATGCATTTGAGATGATTACCTTATCTCAAGGGTTGAATCTTTCACCGCTATTTGACAGGCGTCAGGATTATGTGAAGCGGCAAACCCGTTTTGTTTCACGTAAACCAGCAAGGGTTATAATTTCATATATTGAAGCTGCTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGTAACTACAAGATGAGGCTTGAAGGAGTTGCTGCAAATAATGTTGCTCAATTTGCAGTGGTTTTGGAGGTGTTTGAGGTTGCACCATCACTTTTCATGGTAGATGTTCAAAAGGCAGCTGGTGATACTCTCGAATATCACAAGTTTTACAAGAATCTCTGTGGAAAATTAGAAAGCATTATCTGGAGACCGATGGAGCCAGCCCCAGATTCTGGTATGCTTCGACAAATGACTGTATGA 1341 0.4206 MKKVRNKIGKYEVGRTIGEGTFAKVKFAKNTDTGDSVAIKVMAKSTILKHRMVEQIKREISIMKIVRHPNIVRLHEVLASKTKIYIILEFVMGGELYDKIAQQGKLSENDSRRYFQQLIDAVAHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTKQGVDVLHTTCGTPNYVAPEVLGNQGYDGAAADVWSCGVILYVLMAGYLPFEEADLPALYNRINAAEFVCPFWFSAGAKTLIQKILDPNPKTRMKIEEIRKDPWFRRNYVPVRLSEDVEVNLDDVQAVFDDIEDKYVSEKSESTEGGPLIMNAFEMITLSQGLNLSPLFDRRQDYVKRQTRFVSRKPARVIISYIEAAAESMGLKVHSRNYKMRLEGVAANNVAQFAVVLEVFEVAPSLFMVDVQKAAGDTLEYHKFYKNLCGKLESIIWRPMEPAPDSGMLRQMTV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3370 446 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Amo01g3370 446 Gene3D Kinase associated domain 1, KA1 309 430 - -
Amo01g3370 446 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Amo01g3370 446 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3370 446 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3370 446 Pfam NAF domain 307 366 IPR004041 GO:0007165
Amo01g3370 446 PANTHER - 6 438 - -
Amo01g3370 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 438 - -
Amo01g3370 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Amo01g3370 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Amo01g3370 446 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3370 446 CDD CIPK_C 311 421 - -
Amo01g3370 446 SUPERFAMILY Protein kinase-like (PK-like) 8 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3370 Amo-Chr1 106142720 106148223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3370 1 372 CBL-interacting serine-threonine protein kinases AT5G35410 74.462 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo01g3370 Pkinase 1.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3370 - - gmx:100811380 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3370 01 106142720 106148223 Amo11g2539 11 132575100 132580777 hybridization