Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3360 ATGATTGTGAGCCAGAACATGGTAGCGGAAGCGGAGATTATCTGTAAGCAGAGTATTCCGATGCTGGACATGAAGTATCATCTGTGCGTGACGCAAGAACAAAACGTTAAGATTGAGGTCTCACCAACCTCTCCTTCTGTCCCCATATTTGGTCAAGGTGCATGCTCTGAGGTTCAAGATTCCATTTTGGAGACTCCTGTGATTGAGTTTGTTCCAAATGTGCGTTCTGGTAGCTTTGCAGAGATTGGACCACGCATATCTATGGATGATGAACACATTAGGATAGATGATCTAGCTGGCCACCTTGGATTTGTGTTCAAGTGTCCAATACCGAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGAAGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGGTTATTTTTTGAAGATGCTCATATGCTTCAATCATATGACACCGATTCACTTTTTCTGAAGAAATTGGAAGACACTCATCGGAGAGCTTTTATACGGGCAGACCTCGCCTTGGCTGATGAACAGAGTGTTAGTAGTTCATGTGGGACTACAGCATTGACTGCCCTTATACTTGGAAATCATTTGCTGGTTGCCAATGCTGGAGACTGTCGAGCAGTTCTTTGCAGGAGAGGTACAGCTGTAGAGATGTCTCAAGATCATAGGCCAAGTTATTTGCCGGAAAGGAGGAGAGTGGAGGAATTGGGGGCCTTCATTGATGATGGATATCTTAATGGCTATCTTTCGGTAACTCGTGCCCTGGGTGATTGGGACTTTAAGTTTCCACTTGGTATTGCATCCCCTCTTATAGCAGAGCCAGATGTTCAACTGGTTACTTTGACCGAAGAGGATGAGTTCTTAATCATTGGGTGTGACGGGATCTGGGATGTTATGTCCAGCCAAGTTGCCGTTAGCCTTGTTCGTCGCGGATTAAGAAGGCATGACGACCCACAGCAAAGTGCCCGGGAACTGGTGAAGGAAGCATTGCGCCTAAATACATCAGACAATCTCACTGTGATTGTCATATGCTTGTCCCCTGTACAAAGCATTGTTGAGTCATGTTCTTCGCCCTGGAGAAGAAGATTCAAGGCTTGTAACCTGTCTGAAGAGACCCGAAATAGATTGAAAAGCTTGTCAGATTAA 1146 0.452 MIVSQNMVAEAEIICKQSIPMLDMKYHLCVTQEQNVKIEVSPTSPSVPIFGQGACSEVQDSILETPVIEFVPNVRSGSFAEIGPRISMDDEHIRIDDLAGHLGFVFKCPIPSAFYAVFDGHGGPEAAAFVKRNAMRLFFEDAHMLQSYDTDSLFLKKLEDTHRRAFIRADLALADEQSVSSSCGTTALTALILGNHLLVANAGDCRAVLCRRGTAVEMSQDHRPSYLPERRRVEELGAFIDDGYLNGYLSVTRALGDWDFKFPLGIASPLIAEPDVQLVTLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQSARELVKEALRLNTSDNLTVIVICLSPVQSIVESCSSPWRRRFKACNLSEETRNRLKSLSD* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3360 381 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 369 - -
Amo01g3360 381 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169
Amo01g3360 381 CDD PP2Cc 74 345 IPR001932 -
Amo01g3360 381 PANTHER PROTEIN PHOSPHATASE 2C 7 369 IPR015655 GO:0004722|GO:0006470
Amo01g3360 381 Pfam Protein phosphatase 2C 84 337 IPR001932 -
Amo01g3360 381 Gene3D - 67 349 IPR036457 -
Amo01g3360 381 SUPERFAMILY PP2C-like 67 347 IPR036457 -
Amo01g3360 381 SMART PP2C_SIG_2 90 345 IPR001932 -
Amo01g3360 381 SMART PP2C_4 65 343 IPR001932 -
Amo01g3360 381 ProSiteProfiles PPM-type phosphatase domain profile. 75 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3360 Amo-Chr1 106025738 106027392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3360 1 379 PP2C-type Phosphatase Gene Family AT1G48040 56.489 8.94e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Amo01g3360 PP2C 1.6e-63 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3360 K14803 - gmx:100775577 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3360 01 106025738 106027392 Amo14g1249 14 19972624 19983246 PCT
Amo14g1249 14 19972624 19983246 Amo01g3360 01 106025738 106027392 PCT