Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3347 ATGCTTCCTTGGACAAATGCCGACGACATCATCCCGAATGCCGGTGTTACCAAGGTTAGCGCCAAGAAGGCCATGACACCGATGTTGTCGAGGACAATGGTGAAGGGAAAGAGCAAGATTACATGGTTTAGGTCTATTAAACTTCTAATTTGGTTCTTTCCACATAATAAAATCAACCTGTCAGAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAAAAGTTGGATTTAAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAGTTGGTAGTGGAGAATATGGTGGTGAGAAATTGGGTGGTGAAGGTGGTTGTGTCCCGAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATAGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGCTAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAAGTATTAATTATTCTTCTGTTCCTATTATCAATCTAA 741 0.4143 MLPWTNADDIIPNAGVTKVSAKKAMTPMLSRTMVKGKSKITWFRSIKLLIWFFPHNKINLSEPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSDFVVGSGEYGGEKLGGEGGCVPKTGEAQGSDDNDGWDDDEGYSWNENVKESEVAKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQVLIILLFLLSI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3347 246 Gene3D - 175 235 - -
Amo01g3347 246 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 76 236 - -
Amo01g3347 246 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 206 228 IPR000571 GO:0046872
Amo01g3347 246 MobiDBLite consensus disorder prediction 162 199 - -
Amo01g3347 246 MobiDBLite consensus disorder prediction 94 147 - -
Amo01g3347 246 PANTHER PROTEIN PHOSPHATASE RELATED 76 236 - -
Amo01g3347 246 SMART c3hfinal6 202 229 IPR000571 GO:0046872
Amo01g3347 246 SUPERFAMILY CCCH zinc finger 202 231 IPR036855 GO:0046872
Amo01g3347 246 ProSiteProfiles Zinc finger C3H1-type profile. 202 230 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3347 Amo-Chr1 105883112 105886624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3347 199 231 C2H2 Transcription Factor Family AT1G29570 54.545 9.57e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g3347 zf-CCCH 2.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3347 - - adu:110280340 274.633